Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00100 ATGGATGTTAAGAAAGGTGGGTCTGTAGTACAAGCACAAGTGAAGTTGCAGAAGCATAACGAAAAGGAGATGGGCATGAGAAAAGGTCCATGGGCGGTTGAGGAGGACACCATTCTGGTCAATTACATCGCCACACACGGTGAAGGCCACTGGAATTCCGTGGCACGATGTGCAGGTCTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCAGACGTGCGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTGGTCAAAGATTGCTCAACAGCTGCCAGGAAGAACAGACAACGAAATAAAGAACTATTGGAGGACCAGAGTGATAAAACAAGCGAAGCAGCTAAAGTGCGATGTGAATAGCAAACAGTTCAGAGACACGTTGCGTTACGTTTGGATGCCGCGCTTGCTGGAGCGGCTTCAGCCCACATCACAAGCACTGGAGCCAAACCAAAGTGGACTTGTGTTACACGCTTCATCATCACTGCTTCCTTCGAATTCCGACCATAGTATTGAAAGGGGGTCGGATCTGTGGCCAGGTTTCAATAACCAAATGTTGTTGGAACAGGGGAGTGGCGGTGACTTGTTGGAAAGTTTGTGGGATGACGACAATATGTGCTTTTTGCAACAGCTTTCTTATGACCTCCAAATGAAATAA 711 0.4768 MDVKKGGSVVQAQVKLQKHNEKEMGMRKGPWAVEEDTILVNYIATHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERLQPTSQALEPNQSGLVLHASSSLLPSNSDHSIERGSDLWPGFNNQMLLEQGSGGDLLESLWDDDNMCFLQQLSYDLQMK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00100 236 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Gma10g00100 236 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma10g00100 236 Gene3D - 85 126 - -
Gma10g00100 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 75 IPR017930 -
Gma10g00100 236 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Gma10g00100 236 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Gma10g00100 236 PANTHER MYB TRANSCRIPTION FACTOR 1 232 - -
Gma10g00100 236 SMART sant 80 128 IPR001005 -
Gma10g00100 236 SMART sant 27 77 IPR001005 -
Gma10g00100 236 SUPERFAMILY Homeodomain-like 24 122 IPR009057 -
Gma10g00100 236 CDD SANT 85 124 IPR001005 -
Gma10g00100 236 Gene3D - 28 80 - -
Gma10g00100 236 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Gma10g00100 236 CDD SANT 30 75 IPR001005 -
Gma10g00100 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00100 Gma-Chr10 995057 996368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00100 26 161 MYB Transcription Factor Family AT1G48000 75.735 6.05e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00100 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00100 K09422 - gmx:778065 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02081 19 49693349 49694331 Gma10g00100 10 995057 996368 PCT
Gma03g02043 03 46007458 46008716 Gma10g00100 10 995057 996368 PCT
Gma10g00100 10 995057 996368 Gma19g02081 19 49693349 49694331 PCT
Gma10g00100 10 995057 996368 Gma03g02043 03 46007458 46008716 PCT