Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00096 ATGGCATCGGCGGGTGTAGCACCTGCTTCTGGAGTAAGAGATGTGAATGCAAATTCGGTTGCTGTTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTATATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAACTGCAAACCATGCGTCTTCTGGACCATCCCAATGTTGTAACTTTGAAGCATTGTttcttttcaacaactgaaaaagacgagctttatcttaatttggtacttgagtatgttcctgagactgtccaccgagttatcagacattacaacaaaatgaatcaaagaatgcctttgatatatgtgaaactctATTTTTACCAGATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATagagcacctgaacttatatttggtgcaactgagtacaccacggccattgatatttggtcagctggttgtgtacttggtgaactaatGCTTGGCCAGCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAG 1230 0.3634 MASAGVAPASGVRDVNANSVAVERLPDEMNGMKIRDEREMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTESKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCTALEALVHPFFDELRDPNTRLPNGRYLPPLFNFRANELKGVPPGMLVKLIPSHARKQCALFAS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00096 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00096 409 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
Gma10g00096 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Gma10g00096 409 CDD STKc_GSK3 68 360 IPR039192 -
Gma10g00096 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gma10g00096 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00096 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Gma10g00096 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Gma10g00096 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Gma10g00096 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00096 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00096 Gma-Chr10 943515 948035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00096 79 365 Core Cell Cycle Gene Families AT1G76540 34.915 2.52e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma10g00096 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00096 K00924 - gmx:100817819 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00096 10 943515 948035 Gma10g00096 10 943515 948035 ECH
Gma02g00088 02 927658 932251 Gma10g00096 10 943515 948035 ECH