Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00090 ATGGAAGCTAGATTTGGAGCTGAGGCTTATCATTTTTGCGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCAGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATCGCTAGCCGGCTGAATCCGGTGGTGCCGGCGGACGGTGTTGGAGTGGGACGGCAGTTTTTCCCCACCGGGTCCGGGACTGGGATCCTGGTGGCCGGAGGTCCATCCAACAGTTCTTCCACCTCTGAGGAAGTAGATCCAAGGGATCCCAAGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTTTGAATGAGGAAGGGGGTACTCTTAGTTTAAAGCTTGGTGGCCATGCTTCTGCAGTGGTGGATAGGGAAGTTGCAAGCTGGGACGGTACGAATGGGAAGAAAAGTAGAGTGTCGGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGGCGACATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGCAGTAGGTTTCACCTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGTTTGGCAGGGCATAATAAACGAAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACAAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGTGAGCAAGGGAGCAAGAACATAGCTAACCTTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGATGGTTCATCAAGGAAGTCAGAAATGATGTCTACTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGATACAAGACAACATGAAACTGTATCTATTGCTAAAATGCAGCAACAAGTGATGCATGCACATGATGCTAGGGCTGCTGATCAGCAAATCACATCTTCTATAAAGCCCAGCATGTCAAACAGTCCTCCAGCCTACTCAGAAGCCAGAGACAGTACCGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCTGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCATGGGCACAACAAGATTCCCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCATCTGCCCAGTCTCCTTCTAGTTTCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTCGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAAACGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTAATAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGCACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATATGTCAATGGATCAAAGCTCCAAAGAGCCTGATGAACTTCAGTGTGTCCAGTTTTCATGCTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTCAATTGAACTCTAGTGAGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTGAGAAAACTGTTGAACCTACTGCTTGATGGAACTGTAAATACAGGAGATCATCCTTCCTTGTATCTCGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTAAGGAGAAACAGCAAGCAGTTAGTGGAGTGTCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAACTAGGACCTGAAGACAAGGCACTGGTTGATGGCGAGAATCAGACCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTACTTGATGCTTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAAAATGCTCGTGACAGCACAGGCTCGACACCTGAGGATTATGCCCGTTTACGTGGCCATTATGCTTACATTCACTTAGTGCAGAAAAAAATTAATAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATACGACGGAGAGCAATACAAACGAGAAGCAAAATGAGTTATCCACTACCTTTGAGATTGGAAAGGCTGAAGTAATACGTGGCCAAGGGCACTGTAAGCTTTGTGACAAGAGAATTTCTTGCAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCAATGCTCTCAATGGTGGCAATAGCCGCTGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCCCCCGAAGTTATATGTATGTTCCGACCCTTCAGGTGGGAGAATTTGGACTTTGGAACAAGCTAA 3051 0.4412 MEARFGAEAYHFCGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVVPADGVGVGRQFFPTGSGTGILVAGGPSNSSSTSEEVDPRDPKGNKEGDKKRRVIVLEDDGLNEEGGTLSLKLGGHASAVVDREVASWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGSKNIANLLREPENLLREDGSSRKSEMMSTLFSNGSQGSPTDTRQHETVSIAKMQQQVMHAHDARAADQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSFSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAAPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDAHMSMDQSSKEPDELQCVQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLELSETDPDIEGTGKIKAKNQAMDFIHEMGWLLHRSQLKLRMVQLNSSEDLFPLKRFKWLIEFSMDHDWCAAVRKLLNLLLDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKQLVECLLRYVPENISDKLGPEDKALVDGENQTFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGAAHVVVEIPSNTTESNTNEKQNELSTTFEIGKAEVIRGQGHCKLCDKRISCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00090 1016 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1015 IPR044817 GO:0003677
Gma10g00090 1016 MobiDBLite consensus disorder prediction 289 386 - -
Gma10g00090 1016 MobiDBLite consensus disorder prediction 359 386 - -
Gma10g00090 1016 MobiDBLite consensus disorder prediction 223 245 - -
Gma10g00090 1016 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Gma10g00090 1016 MobiDBLite consensus disorder prediction 317 347 - -
Gma10g00090 1016 MobiDBLite consensus disorder prediction 87 103 - -
Gma10g00090 1016 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677|GO:0005634
Gma10g00090 1016 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1015 - -
Gma10g00090 1016 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Gma10g00090 1016 SUPERFAMILY Ankyrin repeat 787 900 IPR036770 -
Gma10g00090 1016 MobiDBLite consensus disorder prediction 70 103 - -
Gma10g00090 1016 MobiDBLite consensus disorder prediction 429 461 - -
Gma10g00090 1016 Pfam SBP domain 159 232 IPR004333 GO:0003677
Gma10g00090 1016 Gene3D - 758 918 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00090 Gma-Chr10 906014 913623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00090 1 1016 SBP-box Gene Family AT3G60030 53.921 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma10g00090 SBP 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00090 - - gmx:100809806 2018.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00090 10 906014 913623 Gma10g00090 10 906014 913623 ECH
Gma10g00090 10 906014 913623 Gma02g00082 02 895188 902793 GST