Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00089 ATGAGTTGTTTCAGCTGTTGCGAAGAGGATGACCTCCACAAGGCTGCTGAAAGTGGAGGACCATACGTCGTAAAAAATCCAGCAGGAAATGATGGAAATTATCTTGCTTCTGAAACTGCAAAGCAGGGCACTCAGCCTGTTAAACCTCAGCCCATTGAAGTTCCTAATATATCAGCAGATGAACTGAAAGAAGTTACAGATAACTTTGGTCAAGATGCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGAGCTGGCTGCAGCAATCAAGAAGTTGGATGCCAGTAAACAGCCTGATGAGGAATTTTTAGCCCAGGTTTCAATGGTATCAAGGTTGAAGCATGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACACGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGCCCAGTTTTGACAtgggcacaaagagtaaaaattgccgtaggggcggcaagaggacttgaatacttgcatgagaaggctgatccacacattatccaccgggacatcaagtcaagcaatgtgctaatctttgatgatgatgttgctaaaattgcagattttgATTTATCAAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGactggacaattgaatgctaagagtgatgtatacagttttggcgttgttcttctggaacttctgactggaaggaaacctgttgatcatacactaccacgtggacagcagagtctggttacttggGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCACGACCTGGACCTGCCGGTGAAATACCCAATTAA 1086 0.325 MSCFSCCEEDDLHKAAESGGPYVVKNPAGNDGNYLASETAKQGTQPVKPQPIEVPNISADELKEVTDNFGQDALIGEGSYGRVYYGVLKSELAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGEIPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00089 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Gma10g00089 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gma10g00089 361 SUPERFAMILY Protein kinase-like (PK-like) 46 345 IPR011009 -
Gma10g00089 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Gma10g00089 361 Gene3D Phosphorylase Kinase; domain 1 31 143 - -
Gma10g00089 361 CDD STKc_IRAK 75 348 - -
Gma10g00089 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00089 361 PIRSF ILK 6 352 - -
Gma10g00089 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00089 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Gma10g00089 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Gma10g00089 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00089 Gma-Chr10 895089 899480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00089 49 346 Receptor kinase-like Gene Family AT4G02010 50.331 5.73e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gma10g00089 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00089 K13436 - gmx:100808383 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00089 10 895089 899480 Gma10g00089 10 895089 899480 ECH
Gma10g00089 10 895089 899480 Gma02g00081 02 880658 883097 GST
Gma19g02095 19 49814205 49817876 Gma10g00089 10 895089 899480 PCT
Gma10g00089 10 895089 899480 Gma19g02095 19 49814205 49817876 PCT