Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00088 ATGGTGAATGGAAAAATACTTGCATCTGGTGTTTCCCTAATCCTTGTGGTGGGTGTTGCCATCGGTGTTGTGGTTGTTGTTAACAGAAAGGGCACATCCAATCCTGAAGTAGAAGCTCAACAGAAATCCGTGAAGGCAATGTGTGAAGGCACCGATGACCCTAAGCTTTGTCACGATACTCTTATTACCGTGAACAGCACGAATTCCTCAGATCCAAAGGCATACATAGCTGCTGGAGTGGAAGCAACGGTGAAAAGCGTGATCCAAGCATTGAACATGAGTGATAGGCTCAAAGTGGAACATGGAGACAAAGATCCTGGCATCAAAATGGCCCTTGATGATTGCAAGGACTTAATCGAATTCGCCTTGGACAGCATCGAGTCCTCGGCTAATTTGGTTAACAATCACAACATTCAAGCGCTGCATGACCAATCTCCTGACTTCAGGAACTGGTTGAGTGCAATTATCTCGTACCAGCAATCATGCATGGACGGCTTCAACAACGAGACCAACGGTGAGCAGGAAATTAAGGAACAACTGCACACAGGAAGTTTGGACCAAATGGGGAAGCTCACTGGCATAGTCCTAGACATTGTCACCAACTTATCCAAAATCCTTCAGAGTTTTGACCTCAAGTTGGATTTGAACCCGGCTTCTCGTCGTCTTCTCGAGCTTGATGCTGAAGGGTACCCTACGTGGTTCTCTGCTGCAGATCGCAGGCTACTTGCTAAGATGAACCAAGGAGGTGCACCCCCACCCAATGCAGTGGTTGCCCTAGATGGTAGTGGTCAATTTAAATCCGTTAAGCAAGCTATTGACTCCTACCCTAAGAATTTCAAAGGCAGATTCATTATTTATGTTAAAGCTGGGATTTATAACGAGTATATCACTATCCCTAAGAAGTCAGAGAATATTTTGATTTATGGTGATGGCCCTACAAAATCCATTATTACTGGTAACAAAAACTTTATAGATGGCGTCAAGACAATGCAAACTGCCACCTTTGCCAATACTGCACCTGGATTCATTGCCAAGTCAATAGCATTCGAGAACACAGCGGGTGCAAAGAAGCACCAAGCAGTGGCATTCAGAAACCAAGGAGACATGTCGGCCATGTTCGACTGTGCCATGCACGGTTACCAAGACACATTGTACACCCAAGCCAACCGTCAATTCTACCGCAACTGCGAAATCTCGGGCACCATAGACTTCATCTTCGGAGCAGCTCCAACTCTGATCCAGAACTCGAGAATCATAGTAAGGAAGCCAGAAGCTAACCAATTCAACACGGTGACCGCAGATGGAACCAAGCAGAAGAACATGGCCACAGGAATCGTGCTCCAGAACTGCGAGATACTGCCGGAGCAAGCTCTGTTCCCTACAAGGTTCCAAACGAAATCCTACTTGGGGAGGCCGTGGAAGGACTTCGCAAGAACAGTGGTTATGGAATCCAACATTGGCGACTTTATTCAGCCAGAGGGGTGGACCCCTTGGAGTGGGAACTTGTTTCTTGACACGTTGTACTATGCTGAGTATGCTAACGTTGGACCTGGTTCCAACGTTCAAGGAAGGGTTAAGTGGAAGGGTTACCATCCCAATATTAATAAGAACGAAGCTGAGCAATTCACTGCTGGCCAATTCCTCAGAGGTGGACCTTCTGGAAATGCCGATGATTGGTTGAAGGCTACTGGCGTTCCTTATACCATTGGTTTCACCAAACCTTGA 1725 0.4655 MVNGKILASGVSLILVVGVAIGVVVVVNRKGTSNPEVEAQQKSVKAMCEGTDDPKLCHDTLITVNSTNSSDPKAYIAAGVEATVKSVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIEFALDSIESSANLVNNHNIQALHDQSPDFRNWLSAIISYQQSCMDGFNNETNGEQEIKEQLHTGSLDQMGKLTGIVLDIVTNLSKILQSFDLKLDLNPASRRLLELDAEGYPTWFSAADRRLLAKMNQGGAPPPNAVVALDGSGQFKSVKQAIDSYPKNFKGRFIIYVKAGIYNEYITIPKKSENILIYGDGPTKSIITGNKNFIDGVKTMQTATFANTAPGFIAKSIAFENTAGAKKHQAVAFRNQGDMSAMFDCAMHGYQDTLYTQANRQFYRNCEISGTIDFIFGAAPTLIQNSRIIVRKPEANQFNTVTADGTKQKNMATGIVLQNCEILPEQALFPTRFQTKSYLGRPWKDFARTVVMESNIGDFIQPEGWTPWSGNLFLDTLYYAEYANVGPGSNVQGRVKWKGYHPNINKNEAEQFTAGQFLRGGPSGNADDWLKATGVPYTIGFTKP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00088 574 CDD PMEI-like_3 46 204 - -
Gma10g00088 574 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Gma10g00088 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 204 IPR035513 -
Gma10g00088 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 203 IPR035513 -
Gma10g00088 574 Gene3D - 251 571 IPR012334 -
Gma10g00088 574 PANTHER PECTINESTERASE 4 571 - -
Gma10g00088 574 SUPERFAMILY Pectin lyase-like 250 570 IPR011050 -
Gma10g00088 574 Pfam Pectinesterase 254 550 IPR000070 GO:0030599|GO:0042545
Gma10g00088 574 PANTHER PECTINESTERASE 4 571 - -
Gma10g00088 574 Pfam Plant invertase/pectin methylesterase inhibitor 43 198 IPR006501 GO:0004857
Gma10g00088 574 SMART PMEI_2 39 198 IPR006501 GO:0004857
Gma10g00088 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 202 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00088 Gma-Chr10 891941 893814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00088 6 571 Carbohydrate Esterase AT3G05610 41.228 2.73e-144 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00088 K01051 - gmx:100775246 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00088 10 891941 893814 Gma10g00088 10 891941 893814 ECH
Gma10g00088 10 891941 893814 Gma02g00080 02 872295 877829 GST
Gma19g02097 19 49833167 49840592 Gma10g00088 10 891941 893814 PCT