Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00086 ATGTTAAAGGCAGTATCATTTGAACTGTTATTAATTTGCTTGCTACTTCTCACATGTGTGTGTGCTACAACAGATAATGGTTTTCCTAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGAGACCATTCTTGAGTGCCAGAGAATTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCAATCCCCATTGAGCTTCTTTACTTTGTTAGTTGCTCAAACTTCCCTTTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTGAATGGTTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTCACTGTCTTCAAAATCCTCACTGCCTTGGTGTCATGTGCAACTACCATAACCCTCCTCACATTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTGAAGAAAAAAACATGGGATCTTGGGAGGGAGGTTGGCATCATAATGAGACAGAAGGAGGCTGCAATGCATGTGAGGATGCTTACTCAAGAGATTCGCAAGTCGTTGGATAGGCATAAGATTCTCTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAGAATTGTGCAGTGTGGATGCCGAATGTTGAGAAAACCGAGATGAACCTTACGCATGAATTGAATGGGAGGAACGTTAACTGTTCTATACCCATTACTAATCCAGATGTTGTGAGAATTAAGGGAAGTGATGAAGTGAACATAATTGATTCTGATTCAGTACTTGCCACTACCAGCAGTGGAATTTCTGGTGGGGCAGGACCAGTTGCTGCAATCCGAATGCCGATGCTTCGTGTTTGCAATTTCAAAGGGGGAACGCCGGAACTAAGGCAGACGTGTTATGCCATATTGGTTTTGATTCTTCCCAGTGAGGAGCCTAGATCGTGGAGCGCTCAAGAGATGGAGATCATTAAGGTGGTTGCTGATCaggtggctgtggctctgtctcacgcctccattcttgaagagtctcagctcatgagggagaagttggaggagcaaaatcgagctttgcaagtggagaagatgaatgctatgatggcgagccaggcgagagcttcctttcagaaggtcatgagtaatggaatgagaaggcctatgcactcaattttggggttgctttcgataatgcaggatgagaatttgatgagtgatcagaaacttattgtgaattcaatgctaaggaccagcactgtattgtcaaacttgataaatgatgctatggactactcagcaagggatgatggaagattccctttggagatgaaaccttttggattgcatgccatggtgaaagaggcagcttgtcttgccaagtgcatgtgtgtttataggggctttggttttgtggttgatgttgataagtctttgccagacaatgttataggtgatgaaaagagggtttttcaggtgattttgcatatggttgggaatgcaataaatggtagccatggaggaggggttcttgtatttcgagtttttgcagaaactggaagtcaaggaaggaatgaccaggggtggacagcctggagaccaagctcttctagcggggatgtaaatattagatttgaAATAGGGATCAATAATGGTGATCCTGAATTGGAGAGTTCAGTTCCTTCAGGGCAGCTGGCGGGTACAAATCGCATGAGTGATAAGGTTGAGGAAAGGTTGAGCTTTAGCATTTGCAAGAGGATAATCCAGttgatgcaagggaacatatggttagtaccaaatgctcaaggttttcctcaagtcatggccctttttcttcggtttcaactgcggcggtctattgccgtatccatctctgaacctggggaaaattctgagccatccaattcaaattctttcttcagaggtctgcaggtcttgttggccgacaatgacgatgtaaatagagcggtgacgcagaagttgcttcagaaactaggctgtgttgtgacttctgtttcttcaggattggaatgccttagtgtcattggacctgctggatcttcctttcaagtcattcttttggaccttcacatgcctgagcttgatggattcgaagttgcaacgaggattcgtaagttcagaagccggaattggcctgtgattgttgccttgactgctagcacagaagatttgtgggaaagatgcatgcaaattggcatgaatggagtcataagaaagccagttttgttgcatgggattgCTAGTGAACTCAGAAGAATACTATTGCAGGGAAATAGTGCCATGTGA 2289 0.2184 MLKAVSFELLLICLLLLTCVCATTDNGFPRCNCDDESSLWTIETILECQRIGDFLIAVAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATTITLLTLIPMLLKVKVRELMLKKKTWDLGREVGIIMRQKEAAMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTEMNLTHELNGRNVNCSIPITNPDVVRIKGSDEVNIIDSDSVLATTSSGISGGAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPSEEPRSWSAQEMEIIKVVADQVAVALSHASILEESQLMREKLEEQNRALQVEKMNAMMASQARASFQKVMSNGMRRPMHSILGLLSIMQDENLMSDQKLIVNSMLRTSTVLSNLINDAMDYSARDDGRFPLEMKPFGLHAMVKEAACLAKCMCVYRGFGFVVDVDKSLPDNVIGDEKRVFQVILHMVGNAINGSHGGGVLVFRVFAETGSQGRNDQGWTAWRPSSSSGDVNIRFEIGINNGDPELESSVPSGQLAGTNRMSDKVEERLSFSICKRIIQLMQGNIWLVPNAQGFPQVMALFLRFQLRRSIAVSISEPGENSEPSNSNSFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGLECLSVIGPAGSSFQVILLDLHMPELDGFEVATRIRKFRSRNWPVIVALTASTEDLWERCMQIGMNGVIRKPVLLHGIASELRRILLQGNSAM 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00086 762 Coils Coil 337 364 - -
Gma10g00086 762 Pfam Response regulator receiver domain 639 742 IPR001789 GO:0000160
Gma10g00086 762 Gene3D - 431 608 IPR036890 -
Gma10g00086 762 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Gma10g00086 762 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Gma10g00086 762 SUPERFAMILY CheY-like 634 755 IPR011006 -
Gma10g00086 762 ProSiteProfiles Response regulatory domain profile. 638 755 IPR001789 GO:0000160
Gma10g00086 762 SMART gaf_1 185 341 IPR003018 GO:0005515
Gma10g00086 762 SMART REC_2 637 755 IPR001789 GO:0000160
Gma10g00086 762 Gene3D - 618 755 - -
Gma10g00086 762 PANTHER ETHYLENE RESPONSE SENSOR 2 12 759 - -
Gma10g00086 762 Gene3D - 333 430 - -
Gma10g00086 762 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Gma10g00086 762 Pfam GAF domain 185 331 IPR003018 GO:0005515
Gma10g00086 762 Gene3D - 164 332 IPR029016 -
Gma10g00086 762 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 12 759 - -
Gma10g00086 762 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 358 433 IPR036097 GO:0000155|GO:0007165
Gma10g00086 762 SUPERFAMILY GAF domain-like 188 334 - -
Gma10g00086 762 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 509 IPR036890 -
Gma10g00086 762 CDD REC_ETR-like 637 751 - -
Gma10g00086 762 PIRSF Ethylen_sen_hybr_HK 1 762 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gma10g00086 762 ProSiteProfiles Histidine kinase domain profile. 374 589 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00086 Gma-Chr10 845424 849860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00086 25 755 Miscellaneous Gene Families AT3G04580 58.816 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma10g00086 GAF 2.9e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00086 K14509 - gmx:100802948 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00086 10 845424 849860 Gma20g00862 20 34567614 34570452 GST