Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00078 ATGTGTTGTTCTCTATTGCAGAATAGCTTGGAAGACCTATACAGTCTCTTGCGTTTCTTGCGTGTTGAACCTTGGTGCAACTTGACATTGTGGCAGAAGTTAATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGGAGTTGGCCAAGGCCGATACTTTTCTCCCGCCTCCAATTGATATCCAGTTGATTGAGTGTGAACAATCAGAATCTGAACGGGACTTTTATGAAGCCCTTTTCGAGAGATCTGAAGCAAGTTTTGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTCACCATTATGCAAATATCCTTGACCTACTAATGCAGTTGAGGCGGTGTTGTAACCATCCATTTTTAGTTATGTGCGGAAGTGATACCCAGAAACGTGCAGATTTAAGCAGACACGCAAGAAGATTCCTTCAGACTAATACTGAATGCCCCGAAGAAAGCAATCAAAATGATCCTCGGCAGCAAGCAGAGTTGAACAAACTTGCAACGGGTGGTAAATGTCCAATCCGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTATTCATCTGAAAGTCCATTCAAGCTCGATGTTAAGAACAATGTGACGGAGTCTTCAAAGGTTTCAAAGCTATTTGAATTCCTGCAACGTATTTTGAACACATCAAGTGAAAAGAGTATCGTCTTCAGTCAATGGGCATCATTTTTTTATCTGTTGGAGAATTCTTTGAGGAGGAAAGGAATTGGTTTTCTGAGATATGATGGGAAGTTGACTCAGAAGCAGAGGGAGAAAGTTCTGGATGAATTCAACCAGACAAGAGAGAAAAGGGTTATGTTGATGTCACTAAAAGATGGTGGTGTGGGCTTGAACTTAACTGCAGCTTCAAATGTTTTCATTATGGACACGGTGGAAGACCGATTGCAACAAGTTCAAGCTAGGAAACAAAGGTTGATATCTGGTACCCTCACAGATGATGAGGTTCGGACTGCTAGAATTCAAGATCTCAAAATGCTTTTCACACGAGAGTTTATTTATTTAGAAGGTGATTTATTTGTCTAG 1062 0.4077 MCCSLLQNSLEDLYSLLRFLRVEPWCNLTLWQKLIQRPYENGDPRSLELAKADTFLPPPIDIQLIECEQSESERDFYEALFERSEASFVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDTQKRADLSRHARRFLQTNTECPEESNQNDPRQQAELNKLATGGKCPIRRQLLQKDDLITYSSESPFKLDVKNNVTESSKVSKLFEFLQRILNTSSEKSIVFSQWASFFYLLENSLRRKGIGFLRYDGKLTQKQREKVLDEFNQTREKRVMLMSLKDGGVGLNLTAASNVFIMDTVEDRLQQVQARKQRLISGTLTDDEVRTARIQDLKMLFTREFIYLEGDLFV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00078 353 Pfam Helicase conserved C-terminal domain 208 313 IPR001650 -
Gma10g00078 353 SMART helicmild6 238 319 IPR001650 -
Gma10g00078 353 Gene3D - 179 303 IPR027417 -
Gma10g00078 353 PANTHER DNA REPAIR PROTEIN RAD5B 302 340 - -
Gma10g00078 353 PANTHER DNA REPAIR PROTEIN RAD5B 6 306 - -
Gma10g00078 353 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 302 340 - -
Gma10g00078 353 CDD SF2_C_SNF 200 302 - -
Gma10g00078 353 Pfam SNF2-related domain 6 123 IPR000330 GO:0005524|GO:0140658
Gma10g00078 353 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 6 306 - -
Gma10g00078 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 344 IPR027417 -
Gma10g00078 353 Gene3D - 58 131 IPR027417 -
Gma10g00078 353 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 214 353 IPR001650 -
Gma10g00078 353 Gene3D - 6 57 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00078 Gma-Chr10 769585 772223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00078 6 340 RAD5 or RAD16-like Gene Family AT5G43530 49.767 6.85e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma10g00078 SNF2_N 1.1e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00078 K15505 - jre:108986148 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00078 10 769585 772223 Gma20g00874 20 34924240 34930131 GST