Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00072 ATGCTGGCTACAAAAGGGGTACTAGCTGCTCAAACATGCATAGCTACACCTACACGTATCAGCTGGTCATTTGTTGGTTGTGTTATTCTGAAAGAGAAGATAGGGAGGGTGGGTGGTTTGGTTTGGTGCAAATCAATGGATTCCTTAGAAGACAGCGGCTATTGGGATTTTCTCGATTACTCTTTCATTGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAATACTATTAGTGTGAACACCGAAGTTGACATTCCAGGTGATGCTGCTGCGTGTCAAGAGAACACCAAGAAGAGGGGACATGCTGATTCAAGCTGCCAGGTGGGATCTAAAGCTTGCCGTGAGAAGTTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGTCAACTTAAAACTGAAGCTCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTTCGGGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTACCCGTTGCACCAGCAGGGTATATGACTCCACCTGTAGCTGCTGCTGCATATCAAGCAGGGGTTAACAAGATGGCTCTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCTCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 792 0.4444 MLATKGVLAAQTCIATPTRISWSFVGCVILKEKIGRVGGLVWCKSMDSLEDSGYWDFLDYSFIDQAPPDFLWSNNTISVNTEVDIPGDAAACQENTKKRGHADSSCQVGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGYMTPPVAAAAYQAGVNKMALYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00072 263 Pfam Helix-loop-helix DNA-binding domain 110 157 IPR011598 GO:0046983
Gma10g00072 263 PANTHER BHLH TRANSCRIPTION FACTOR 46 263 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma10g00072 263 SMART finulus 112 163 IPR011598 GO:0046983
Gma10g00072 263 Coils Coil 147 202 - -
Gma10g00072 263 PANTHER TRANSCRIPTION FACTOR BHLH104 46 263 - -
Gma10g00072 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 180 IPR036638 GO:0046983
Gma10g00072 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Gma10g00072 263 Gene3D - 110 190 IPR036638 GO:0046983
Gma10g00072 263 CDD bHLH_AtILR3_like 111 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00072 Gma-Chr10 729694 737223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00072 109 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.323 8.48e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g00072 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00072 - - gmx:100789655 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00072 10 729694 737223 Gma20g00879 20 35030949 35036372 GST