Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00071 ATGTTTACATCTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCCTCAATTGGTCCCATGTTGATCATGTAAGGATTTTTTCTCTATCTAGGCTTCATGAAGATCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATCCCAGTGATTCAATACAAGCCAGAGGAAGGGAACACAGAATTTGGTGAAAGAAGCTTAATTAGTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTGAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAAAACAATGCTCATTGCCCTCTTTGTAGAAGAACAGTTTCCTTGACAAGCCAAGTCCATCGTCATGTTGACCAAGTCAACCTTCTTATCACTCCAAGGCCTTCCCATCAGGGCCAAAGCCAAAACAATGAAAACCTCACTGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAGGAAGACAAGAAGAGTTACCAACAACATGTCCTATCATTAGTCTTTCTTCAGGAATTAAGTTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACTAGTTTGGGAGATGAGTGTATTGGTGTTAGAGCCAAGGGTGAAAGGTTATCAGTTCAAGCCATGAAGAGGTCTTTCTCCATGGACTCATCAGTGGATAGAAAGTTTTATGGGGCAGTTCAAGAGGCTTTACATCAACAACAGCAAAATGGGAATGTGTTTGAGGTCAGCACAATTGAAGCTTCTGGTGAAAGTGATAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAAATCAAGAAGTGCTGTACTCCCTGTTTATTTGGACCCCTGA 921 0.4104 MFTSFFLIGYYMLVVKCCLNWSHVDHVRIFSLSRLHEDPSAPYSTASEPRGLEEAVIKLIPVIQYKPEEGNTEFGERSLISSECSVCLSEFEQDEKLRVIPNCSHVFHIDCIDVWLQNNAHCPLCRRTVSLTSQVHRHVDQVNLLITPRPSHQGQSQNNENLTDEGGFVVIDLDGEHDRDQGRQEELPTTCPIISLSSGIKLLEEKKARKLQKVTSLGDECIGVRAKGERLSVQAMKRSFSMDSSVDRKFYGAVQEALHQQQQNGNVFEVSTIEASGESDRVKRSFFSFGHGSKSRSAVLPVYLDP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00071 306 Pfam Ring finger domain 83 126 IPR001841 -
Gma10g00071 306 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Gma10g00071 306 PANTHER RING-H2 FINGER PROTEIN ATL16 1 305 - -
Gma10g00071 306 PANTHER RING-H2 FINGER PROTEIN ATL16 1 305 IPR044600 GO:0016567|GO:0016740
Gma10g00071 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 131 IPR013083 -
Gma10g00071 306 SMART ring_2 84 125 IPR001841 -
Gma10g00071 306 SUPERFAMILY RING/U-box 68 132 - -
Gma10g00071 306 CDD RING-H2_PA-TM-RING 83 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00071 Gma-Chr10 725692 726612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00071 1 306 C3H Transcription Factor Family AT1G04360 40.476 4.93e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00071 - - gmx:100814827 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00071 10 725692 726612 Gma20g00880 20 35101014 35102355 GST
Gma19g01546 19 44830986 44832136 Gma10g00071 10 725692 726612 PCT
Gma03g01492 03 41163981 41165015 Gma10g00071 10 725692 726612 PCT