Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00065 atggttagagctccttgttgtgaaaagatgggattgaaaaagggtccttggaccccagaggaagatcaaatcctcatgtcatacatccaaaaacatggccatggaaattggcgtgccctcccaaagcttgcagGACTATTGaggtgtggaaagagctgcagactaaggtggattaactatctaaggcctgatatcaagagaggcaatttctcaagtgaagaagAGGAAATTATCATTAAGATGCATGAGTTGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAAAAGAGGTTAATGAATTCAGATACCAACAAAAGGGTTTCCAAGCCAAGAATCAAACGATCTGATTCCAATTCCAGCACACTTACTCAATCAGAACCTACATCATCATCAGGATGCACTACTTCTAGTGATTTTTCATCATTTAGTGAAGGGACTAAAAACATGGACAACATGATCAAGAGGGAAGACATAGAGTCTATGGAGACAGTAAAGCCTCCAATTGATGAAAGCTTTTGGCCACAAGAAACAGTGGATTATGAAAGCTCCACCATGATGCAATCATCAAATTCTTGGACAATTTCTAATGAATTAGCACCCCCTCAATACCAATTTAATTCAGTGGAAACCTTTCAACAGCAAAGTGTTGGTTATAATGATTCAAAATTTGATGATGGCATGGATTTCTGGTATGACATATTCATCAAATCAGGAGAGTCAATCGAATTGCCAGAGTTCTGA 795 0.2767 MVRAPCCEKMGLKKGPWTPEEDQILMSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLMNSDTNKRVSKPRIKRSDSNSSTLTQSEPTSSSGCTTSSDFSSFSEGTKNMDNMIKREDIESMETVKPPIDESFWPQETVDYESSTMMQSSNSWTISNELAPPQYQFNSVETFQQQSVGYNDSKFDDGMDFWYDIFIKSGESIELPEF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00065 264 MobiDBLite consensus disorder prediction 117 131 - -
Gma10g00065 264 CDD SANT 69 112 IPR001005 -
Gma10g00065 264 Gene3D - 13 66 - -
Gma10g00065 264 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 255 - -
Gma10g00065 264 CDD SANT 16 61 IPR001005 -
Gma10g00065 264 SMART sant 13 63 IPR001005 -
Gma10g00065 264 SMART sant 66 114 IPR001005 -
Gma10g00065 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma10g00065 264 MobiDBLite consensus disorder prediction 132 166 - -
Gma10g00065 264 Gene3D - 69 143 - -
Gma10g00065 264 MobiDBLite consensus disorder prediction 117 167 - -
Gma10g00065 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma10g00065 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma10g00065 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma10g00065 264 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma10g00065 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Gma10g00065 264 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma10g00065 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00065 Gma-Chr10 654527 656691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00065 1 264 MYB Transcription Factor Family AT2G31180 50.558 4.47e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00065 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00065 K09422 - gmx:100806975 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00065 10 654527 656691 Gma02g00052 02 619350 621446 GST
Gma19g01555 19 44934829 44937065 Gma10g00065 10 654527 656691 PCT
Gma03g01500 03 41249472 41251551 Gma10g00065 10 654527 656691 PCT