Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00062 ATGGCAGATCTTTCTAGCTACGGGAGTCATGAGCGCGATATTGAACAAGCATTCATTACTTTGAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCAAAACTCTGTACATTCAGGATCTCATCGGATGAAACGAAACTGATTTGGATATCTCATGGAAGGGAAAAGAATCTAAAATTGTCTTCTGTTTCACGCATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGGTCACTTGATCTGATTTGCAAGAACCAAGCTGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCCCTGGAGAGCGTATTAGGCGTGGAACAAGTGATTTATCCAATGATAGTGTTGACTTAATTCCAAATGATCGTCCTTATGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTGGCAGGTTTTCTTTTGAATCAGTGTCTCATGAATCTACATCATCTTGGTCTAGATCAGAAACAAATATGCCAGTAAGGACAAGTTGTGGAGATGGTTCGCGTGTTAGTGTATCAAGTGTTAGTCACTCAAGTAGCGTAGGATCAGGACTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGCAATTCATTTGATGGATTGGGGAGTCAACTTCAAGCCTTTTGTAAGACAGATGTGCTGACTCCTAAACCGTTGGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGTCCTGGTGATCGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGATTCTGGTGGAAGACTTGGTCATGGATTTGAAAAAGATTTCGGTCGACCTCATCTTGTGGAATCCCTGGCAATTACCAATGTGACTTTTGTTGCGTGTGGCGAGTATCATTCTTGTGCTGTGTCCACATCTGGTGACCTATTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCACTGATGTTAGCTACTGGATACCAAAAAGGGTTAGTGGCCCTTTAGAGGGACTTCAGGTTGTAGCTGTAGCATGTGGAACATGGCATTCAGCATTAGCAACCTCCAATGGTAAGTTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAAACCGAGCGAGTGTGGCATATCCAAAGGAGGTACAATTATTGAGTGGATACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACTCAGCAGCCATTATAGATGTTATGGATCTTTCTGGTTCAAAGGCTTCAGCCAAGAGGCTCTTCACGTGGGGTGATGGTGACCAATATCGTTTGGGTCATGCTAACAAGGAAACTTACCTTGAACCAACTTGTGTAGCTGCAGTTGCTGAATATAATTTTCACCAGGTTGCATGTGGGTACACTATGACTGTTGCACTCACTGCATCTGGTCATGTTTTTAGCATGGGAGGCACAACATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTGCCGATTCTAGTGCGAGATAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGTGCCAATCATGTTGCTGTGTTGACTTCAAGAAGTGAGCTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGATAAGAAATCTCCAACATTGGTGGAAGCCTTGAAAGACAGGCATGTTAAGAACATCTCATGTGGCTCGACCTTTACATCTTGCATATGCTTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTCACCCGAAAAAGGCACAATTGCTATCATTGTGGGTTGGTATATTGCCATCCTTGTAGTTCAAAAAAGGCATCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAGTGCTTCCGATTTTAATAGGGAAATTAGTCGTCCTTCTAGTTCCGTATATGGAAGGGAAAGTTTTCACCGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCTACCACAGAACCGGTAAAATACCTAGAGATTAGGACTAATAAGCCTGGAAATATGCATGACTTTTCTTCCATAGTCCGAGCTGCTCAAGTTCCTACCAGTTTACAATTGAAAGATGTTGCATTTCCAATTTCGTTGAGTTCTGCGCAGAATGTTTACAAACCTGTTATACAGCCAACTCCACCAACACCGGCTACTCCAATACCTATGTCACCATATGCTAGAAGACCACCCAGTCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAACAAGTCTCAAAATGGCAAAACAATAATCAAAATTTGAAGCAGAAGAGTGACATGCAAGACATGAAGATTCGGGAGCTTCAGAAAAATATTGAAGAAGCCGTGTCACGAGTTGGAGAGGAATCTTCTAAGCTTAGAAAAGCAAAGGAATTAATTAAGTCCTTGACAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACTTGAGATTCCGGACAACGAGACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCTTCATGAAGAAAAAGATTTTGAATCTTCTTCCTCCCCACAGAGCCTTGAGTCTGAGCAACAAAGTGCACCTGATGTACCTGCCTCAGAAAGCGACTCTTCAAAACTCCAAGAGCAAAGAATGGAAGGAAATGATGATGCTTTTGGGGTTGTTCCATCTATAGATGGAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTGGTCCAGTAGTGACTTCGCCAAGCTCAGGAAATGGTTCAAAATTACGTGACACTGGTATACCTGTGACAGAAGGAGAAAAATCAGTCATTGAACAATTTGAGCATGGTGTTTATGTCACACTCGTAGTACTACCTCGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGGAGATTCAACGAGAAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGCATAGTAAATACAATTTACCAATCACAAAGAATGCAACTACTGGATCATCTATCATACCTCCACAAGCTGAAGAAAAATGTGAGGCATTACCTTCTTCCTAA 3237 0.4217 MADLSSYGSHERDIEQAFITLKKGTQLVKYSRKGKPKLCTFRISSDETKLIWISHGREKNLKLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKNQAEVEVWFSSLKALISPGERIRRGTSDLSNDSVDLIPNDRPYAGTLEFASSIARGRFSFESVSHESTSSWSRSETNMPVRTSCGDGSRVSVSSVSHSSSVGSGLDDIESLGDVYIWGEVWADGNSFDGLGSQLQAFCKTDVLTPKPLESDVVLDVHQIGPGDRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNVTFVACGEYHSCAVSTSGDLFTWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVAVACGTWHSALATSNGKLFTFGDGRFGVLGHGNRASVAYPKEVQLLSGYKAIKVACGVWHSAAIIDVMDLSGSKASAKRLFTWGDGDQYRLGHANKETYLEPTCVAAVAEYNFHQVACGYTMTVALTASGHVFSMGGTTYGQLGNPNSDGKVPILVRDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTDDKKSPTLVEALKDRHVKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRHNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASDFNREISRPSSSVYGRESFHRGEVRSSRVLLPPTTEPVKYLEIRTNKPGNMHDFSSIVRAAQVPTSLQLKDVAFPISLSSAQNVYKPVIQPTPPTPATPIPMSPYARRPPSPPRSTSPGFSRSLIDNLRKKNDHLNQQVSKWQNNNQNLKQKSDMQDMKIRELQKNIEEAVSRVGEESSKLRKAKELIKSLTDKLREVTEKLPLEIPDNETLRTMHAQAEEFLHEEKDFESSSSPQSLESEQQSAPDVPASESDSSKLQEQRMEGNDDAFGVVPSIDGENILEESSNSSVSGPVVTSPSSGNGSKLRDTGIPVTEGEKSVIEQFEHGVYVTLVVLPRGYKVFKRIRFSKRRFNEKQAEEWWNQNKDKVHSKYNLPITKNATTGSSIIPPQAEEKCEALPSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 386 435 IPR000408 -
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 331 382 IPR000408 -
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 280 328 IPR000408 -
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 554 601 IPR000408 -
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Gma10g00062 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 450 497 IPR000408 -
Gma10g00062 1078 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1049 IPR013591 -
Gma10g00062 1078 Gene3D - 13 130 IPR011993 -
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 449 500 IPR000408 -
Gma10g00062 1078 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 12 1057 - -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 957 984 - -
Gma10g00062 1078 CDD PH_PLC_plant-like 12 124 - -
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 386 IPR000408 -
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 280 331 IPR000408 -
Gma10g00062 1078 SUPERFAMILY PH domain-like 14 123 - -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 282 298 IPR000408 -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 389 403 IPR000408 -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 490 508 IPR000408 -
Gma10g00062 1078 PRINTS Chromosome condensation regulator RCC1 signature 548 569 IPR000408 -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 902 985 - -
Gma10g00062 1078 Pfam Transcription factor BRX N-terminal domain 853 887 IPR027988 -
Gma10g00062 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 681 IPR013083 -
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Gma10g00062 1078 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 609 671 IPR017455 -
Gma10g00062 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Gma10g00062 1078 Gene3D - 160 343 IPR009091 -
Gma10g00062 1078 Gene3D - 344 441 IPR009091 -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 766 793 - -
Gma10g00062 1078 ProSiteProfiles PH domain profile. 1 124 IPR001849 -
Gma10g00062 1078 SUPERFAMILY RCC1/BLIP-II 218 606 IPR009091 -
Gma10g00062 1078 SMART fyve_4 603 672 IPR000306 GO:0046872
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 438 IPR000408 -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 764 800 - -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 910 933 - -
Gma10g00062 1078 Coils Coil 802 878 - -
Gma10g00062 1078 ProSiteProfiles BRX domain profile. 995 1050 IPR013591 -
Gma10g00062 1078 MobiDBLite consensus disorder prediction 1058 1078 - -
Gma10g00062 1078 Pfam FYVE zinc finger 605 670 IPR000306 GO:0046872
Gma10g00062 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 1057 - -
Gma10g00062 1078 SUPERFAMILY FYVE/PHD zinc finger 605 675 IPR011011 -
Gma10g00062 1078 Gene3D - 442 610 IPR009091 -
Gma10g00062 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00062 Gma-Chr10 629381 636885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00062 992 1051 Major Intrinsic Protein MIP AT1G31880 43.333 1.09e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00062 - - gmx:100812689 2045.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00062 10 629381 636885 Gma02g00049 02 598199 605604 GST