Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00041 ATGGCAGCAGAGACGAAAGAAGTTTCAGGTTCGGAGATGTCTCTAAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCAAGACCCTTCTAACCCTACTCTCTATAGTAACCGTGCTGCAGCATTACTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATGACAATCAAATTAAAACCCCAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATATGATGACGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACCCGCAAAGTCAAGAAGTAACAAAAAAGATAAAGAAGATAAACCAACTGATGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCCAATGTTGACATGGCCAAACATTTAGATACATTCAAAACTGAAATGTCCGGGAAGTATGGATTAGAAGAAGGCTGGAAAGATTTGTTCTCATTCCTTGTTGAGACTATGGAGACAGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGAAAAGACAGACACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACACATGGCAACTGCTTTGCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCCTGCTTGGTGACTCCGAAGAACATCATTGCTTATCCACAGGTCTGGAAGGGCCAAGGACCAAGAAAGTGGAAACATGCACAAAGTGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCCTGCGAAAGCTGTGGTTTATACCAAGTTCGAATGAAAAGGGGCAGACATTATGCAGGGATCCAGAGGTTTTGGACATTGGTGCTCATGAAGTTCTTCCCCGGTTATTAAAAGAAAATCTGCCCCATTCTTAG 978 0.4192 MAAETKEVSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVTKKIKKINQLMKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGLEEGWKDLFSFLVETMETAVKSWHETSSVDARVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGPRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGAHEVLPRLLKENLPHS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00041 325 PANTHER TPR REPEAT CONTAINING PROTEIN 14 320 IPR045248 GO:0006457|GO:0030544|GO:0051879
Gma10g00041 325 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515
Gma10g00041 325 SMART tpr_5 80 113 IPR019734 GO:0005515
Gma10g00041 325 SMART tpr_5 46 79 IPR019734 GO:0005515
Gma10g00041 325 SMART tpr_5 12 45 IPR019734 GO:0005515
Gma10g00041 325 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Gma10g00041 325 Coils Coil 52 72 - -
Gma10g00041 325 Pfam Tetratricopeptide repeat 81 112 IPR013105 -
Gma10g00041 325 Gene3D Tetratricopeptide repeat domain 5 162 IPR011990 GO:0005515
Gma10g00041 325 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 14 320 - -
Gma10g00041 325 SUPERFAMILY TPR-like 14 123 IPR011990 GO:0005515
Gma10g00041 325 Pfam TPR repeat 19 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00041 Gma-Chr10 395512 403025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00041 15 158 U-box Gene Family AT3G07370 24.684 5.26e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00041 - - gmx:100775252 658.292