Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00034 ATGAATCCTAACAATGATGGTCCTATGATTCTTGTGAAGGAAGAGTTTCCCGAAGGTGTGGCTATTGCTCCACAACCATTGGAGGGGCTTCATGAGATTGGTCCTCCACCATTCCTCACAAAGACTTATGACATCGTCGATGATGTTTCCACTGATGAGATAGTTTCGTGGAGCAGAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAGGCTTTTTCCATCACTCTTCTCCCCAGATACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACCTATGGGTTTAGAAAGGTAGATCCGGATAAGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAGAAGCATCTATTGAAGAACATAAGGAGAAAGAAGACATTAACTAATCAACAACAAGCTCTTCCAATAGACCATTGTGTTGAAGTGGGGAGGTTTGGATCATTAGATGGTGAAGTTGATGCATTGAGACGTGACAAGCAAGTTCTCATGGTGGAGCTAGTGAAGCTCAGACAACAACAGCAGAACACAAGAAACAACCTTCAATCAATGGAAAATAGGCTTAAAAGGACTCAGAAGCAGCAGCAACAAATGATGAAGTTCTTGACAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAACAAAGGGAATGGAGAAAGGATCTTGAGGAGGCAGCTACTTTTTCCAACAAGAGAATAAGAAGTGATGTTGAAGAATGCTCAAGTTTTGTTAAACTTGAACATGAGGAGGAGCACAATAATGACATAACATCATCAGAGCTTGAGGTTTCTGACATGGACCTTGTTATTATGAACACTGAGGAGGAGGAAGAGAAATTATTAGGAGCTGAAATTGAAAGCATTAATGAGGAAGTACTCTGGGAAGAGCTTTTGAATGAGGGTACTGAAGAAGATGTACTAATAGGATTGGAAGAAGATGATGAAGATATAGTTGTGTTGGCTGAGGAACTTGGTTATTTGGCCTCAACTCCCAAATAA 1014 0.4152 MNPNNDGPMILVKEEFPEGVAIAPQPLEGLHEIGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKNIRRKKTLTNQQQALPIDHCVEVGRFGSLDGEVDALRRDKQVLMVELVKLRQQQQNTRNNLQSMENRLKRTQKQQQQMMKFLTRAMQNPNFLQQLVQQREWRKDLEEAATFSNKRIRSDVEECSSFVKLEHEEEHNNDITSSELEVSDMDLVIMNTEEEEEKLLGAEIESINEEVLWEELLNEGTEEDVLIGLEEDDEDIVVLAEELGYLASTPK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00034 337 Coils Coil 276 296 - -
Gma10g00034 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 327 IPR027725 -
Gma10g00034 337 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 19 327 - -
Gma10g00034 337 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 Gene3D - 31 128 IPR036388 -
Gma10g00034 337 SUPERFAMILY "Winged helix" DNA-binding domain 34 127 IPR036390 -
Gma10g00034 337 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00034 337 Coils Coil 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00034 Gma-Chr10 323825 325861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00034 24 335 HSF AT3G22830 53.151 4.70e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma10g00034 HSF_DNA-bind 4.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00034 K09419 - gmx:100806789 645.58