Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00020 ATGGTAGATCCTGTCAGCCTTTGCACCGGTACTAAATGTGAGAGATCCGCCATTGAAGCTTGGTTTGATGATGGAAACGGGACTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCAAATGTTCAATTAGGAGAGTCCATAGAAGAGTGGAGAGAAGTTAATTACTGCTTTGGAATAAGGTCTATCAGAGAAAGCCTATTATCCAATTCTGAATTACTAGTGCAAGAATCTCAGAGCCAAATTCAGGATCTCTTAAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACCGATATTATTATCTCTATCCTTGGGGAATCTAATTCCAGAGATGTAAAGATGAAGATCTTGATCACGTTTAAGGATGCTGTAGAGGGGCATGCATGA 411 0.3966 MVDPVSLCTGTKCERSAIEAWFDDGNGTDPETKEVLEDTTLRSNVQLGESIEEWREVNYCFGIRSIRESLLSNSELLVQESQSQIQDLLRENSINKDWISIGELTDIIISILGESNSRDVKMKILITFKDAVEGHA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00020 136 Coils Coil 71 91 - -
Gma10g00020 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Gma10g00020 136 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 136 - -
Gma10g00020 136 Pfam U-box domain 1 57 IPR003613 GO:0004842|GO:0016567
Gma10g00020 136 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Gma10g00020 136 SUPERFAMILY RING/U-box 1 58 - -
Gma10g00020 136 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Gma10g00020 136 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00020 Gma-Chr10 194373 194783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00020 1 134 U-box Gene Family AT1G20780 33.571 1.16e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00020 - - gsj:114377374 239.965