Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00013 ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGCTGTTATTGCTTCATGCTATCGAAGAATTTTCTTGCAAGTCTACTTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTACGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGAAAACAAGAACTCCAAGATTTGGAAGAATGTTCAACCTTTCATTGATTGGCTTCAGAGTGCAGAATCAGAAACCGAGGAAGAATAA 615 0.4244 MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKLLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGENKNSKIWKNVQPFIDWLQSAESETEEE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00013 204 MobiDBLite consensus disorder prediction 1 30 - -
Gma10g00013 204 MobiDBLite consensus disorder prediction 1 25 - -
Gma10g00013 204 Gene3D - 71 195 - -
Gma10g00013 204 SUPERFAMILY ARM repeat 119 198 IPR016024 -
Gma10g00013 204 SMART 542_3 109 200 IPR003307 GO:0005515
Gma10g00013 204 SUPERFAMILY Histone-fold 31 73 IPR009072 GO:0046982
Gma10g00013 204 Pfam Transcription initiation factor IID, 18kD subunit 30 118 IPR003195 GO:0006366
Gma10g00013 204 CDD TAF13 28 118 IPR003195 GO:0006366
Gma10g00013 204 ProSiteProfiles W2 domain profile. 3 204 IPR003307 GO:0005515
Gma10g00013 204 Gene3D Histone, subunit A 30 70 IPR009072 GO:0046982
Gma10g00013 204 Coils Coil 103 127 - -
Gma10g00013 204 CDD W2_eIF5 131 202 - -
Gma10g00013 204 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED 1 124 IPR003195 GO:0006366
Gma10g00013 204 Pfam eIF4-gamma/eIF5/eIF2-epsilon 128 204 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00013 Gma-Chr10 144549 147914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00013 121 197 Eukaryotic Initiation Factors Gene Family AT1G77840 55.696 9.59e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00013 K03127 - gmx:100796504 249.21