Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00001 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGTAGACTCCCACCTGCAACTGCAAGTGAGCACTTTCGTTGTAATAATGCCTCCCCCTCTAGACACGTGCATTTCTCTTTGCCTCCTTCATTTGTTATTGGAACCCATAGGCTAATTCGAAACGCCACTAACACCAATGAAACTAAGGTGGTTTCCAGTACTAATGTCAAAAGTAGAAGAAGGAGAAGAAGAAGTGGCTTTGTTGACAAAACTTGTCAAACTCGGGAGGTGGAGGAGGGTATTCTTCATCAGAACGGAGACCCTATTGGGAAGAAGGATCTCGGGAAGAGTGTGATAAGGTGGATTCGTGATAGCATGAGGGCCATGGCGTCTGATTTAGCTGCGGCAGAGTTAGAGGGAGGAGAGGGAGAGTTTGAGTTGTGGGAGCTCATGGGACCTGGTCTCACTTTTATTATGCTGGCACAGCCATATCTCAATGCTGTTCCTATGCCCATTGGCCTTGAGGGTCTCTGCTTGAAGGCCTGCACGCACTATCCCACTCTTTTCGACCATTTTCAGAGAGAGCTTCGCCAAGTTCTCCGAGACCTGCAGCAGAGTAACTCCTTCATTCAGGACTGGCGTGACACCAAGTCTTGGAAACTACTTAAGGACCTCGCCAATTCAGCTCAGCATAGGGCGGTTGTGAGAAAGATAACGCAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTCGAAAAGGTCAAAGCATTACAGCACAGGATTGACGAATTCACCACCCATATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAGTTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAAACGATTGATTTCTTGGTTAGCCATAGCCAGCCTCAACAAGAACTCTGCGACACCATTTGTAATTTAAACGCTATCAGTACCTCTACAGGACTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCAACCACTCTTTCACCTGGAGACATGGTTTGTGTGAGAACATATGACAGCATGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGGGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACTTATGAGCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAAAATCATTTGGCTGACTGGGCAGAAGAAAAATTGGATGGAAGATTAGGAAATGAAACCTTTGATGATTCTCAGTGGAGAGCAATTGCAATGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTAGAAAAGCTTTCAAATGTTGGATTAAATATAGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTTCAGGCATACGCCAACTTCTGAAGCAACTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCGTAATTGAAGTTCTGTCTAGTGCTCAAGTTGTGGTTGCCACTAATACTGGAGCAGCTGACCCTTTGGTTCGAAGGCTAGATACCTTTGATTTGGTTGTCATAGATGAAGCGGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGTTGGTCTAGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTAGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACACAATGCCCGCTGCTATTGCTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGAAGAGCATCTAGACCCGGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTATTTTCCTTAATCTATGCCGGTGTTAGCCCAACAGCTATTGCAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCAGAAGCAGCAGGTACTGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTTGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGGCTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATATGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2850 0.4404 METALTCFFCGRLPPATASEHFRCNNASPSRHVHFSLPPSFVIGTHRLIRNATNTNETKVVSSTNVKSRRRRRRSGFVDKTCQTREVEEGILHQNGDPIGKKDLGKSVIRWIRDSMRAMASDLAAAELEGGEGEFELWELMGPGLTFIMLAQPYLNAVPMPIGLEGLCLKACTHYPTLFDHFQRELRQVLRDLQQSNSFIQDWRDTKSWKLLKDLANSAQHRAVVRKITQPKSVQGVLGMDFEKVKALQHRIDEFTTHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKTIDFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTYDSMGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHLADWAEEKLDGRLGNETFDDSQWRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLASGIRQLLKQLGRSLKKKEKQTVIEVLSSAQVVVATNTGAADPLVRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEVGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00001 949 Coils Coil 576 596 - -
Gma10g00001 949 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 55 949 - -
Gma10g00001 949 Pfam AAA domain 701 904 IPR041679 -
Gma10g00001 949 Gene3D - 259 707 IPR027417 -
Gma10g00001 949 Gene3D - 723 931 IPR027417 -
Gma10g00001 949 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 55 949 - -
Gma10g00001 949 SMART ultradead3 471 723 IPR014001 -
Gma10g00001 949 Gene3D - 288 409 - -
Gma10g00001 949 Pfam AAA domain 475 691 IPR041677 GO:0004386
Gma10g00001 949 CDD SF1_C_Upf1 725 921 IPR041679 -
Gma10g00001 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 911 IPR027417 -
Gma10g00001 949 CDD DEXXQc_SMUBP2 475 724 - -
Gma10g00001 949 SMART AAA_5 490 705 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00001 Gma-Chr10 14678 25129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00001 473 664 Core DNA Replication Machinery Family AT1G08840 25.773 5.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00001 - - gmx:100799347 1848.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00001 10 14678 25129 Gma02g00011 02 118549 130808 GST