Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02593 ATGGGACGTGGAAAGATAGAGATAAAGAGGATCGAGAACAAAACCACAAGGCAAGTGACCTTCTCCAAAAGAAGATGTGGCCTCTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCTAAGATCGGGATTATCATCTTCTCCAGCACCGGGAAGATGAGGGAATGGTGCACCGAACCCTTCAGGATGGAGCAGATCATAGAGCAGTACCAGATATCAAAAGGAACTTGCATAGCGGAACGTGGACGTGATCATCCCCGAGAAGAATTTGTCCATAACATGGCAATGCTGAGGCAGAAAACTATTCGTCTTGAATTGGAAATTCAACGCTATCTTGGAGAGGACACGAGGGGTTTGCAATATGAGGATTTGACTAAGCTTGAACAAGAATTGGAGAACTCTGTGGCAAGGGTTCGAAACCGTCATAATGAGCTCTTGCAACAACAAATGGAGAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTCCAATTGGGAACACCAAGCAGTGTTGGAGTTTCAGAAGGCCGCTGATACAGTGGAAGCAAGCAAACCAATGCATGTGATGGATCACTTCTCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTAGCTTCTCCTATGCTTCCACACTTTTACCCATATCTTCAGCTGGCACAGCCCAATATCCAAGACTCAGTCAGGGACCAGAGCTATAACAATGAATGGCCACCAGGAACAATTTGTGGTGGAGTCACATGGAGGAGGCCCAAAATTGTTGAATATAGTATCAGGTCAGGTCAGTATTCTAAAGATGTTGTCATGACTAAGCTGGAGGGGATTAGTGGGGCTATGGAGGGTTTCAAGGAGACTTTGGAGAGGTTTGGTGGGAACGAAGAGGGTAAAATTTTTTGTGAGGGGTGCATGAAGTAG 936 0.453 MGRGKIEIKRIENKTTRQVTFSKRRCGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTEPFRMEQIIEQYQISKGTCIAERGRDHPREEFVHNMAMLRQKTIRLELEIQRYLGEDTRGLQYEDLTKLEQELENSVARVRNRHNELLQQQMENLRRKERILEEENNNLSNWEHQAVLEFQKAADTVEASKPMHVMDHFSFFEEQPAGSILQLASPMLPHFYPYLQLAQPNIQDSVRDQSYNNEWPPGTICGGVTWRRPKIVEYSIRSGQYSKDVVMTKLEGISGAMEGFKETLERFGGNEEGKIFCEGCMK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02593 311 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02593 311 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gma09g02593 311 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Gma09g02593 311 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 Coils Coil 122 174 - -
Gma09g02593 311 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gma09g02593 311 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 218 IPR031050 GO:0005634|GO:0048316
Gma09g02593 311 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02593 311 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma09g02593 311 PANTHER MADS BOX PROTEIN 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02593 Gma-Chr9 51256862 51261762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02593 1 239 MADS-box Gene Family AT5G23260 47.266 4.01e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma09g02593 K-box 8.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02593 - - gmx:102667157 460.299