Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02575 ATGGGCAATAAATCAGATCCCAAAGCTGGTGCTACTGCTGTGCCACCTCCCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTCAATGCAAAGAAGCATAAGAGACATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTTGAAGATTTTGAACCAGATAAGAATCCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGCAAACCTGATAGTGCTAACTGTTCCGGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGGTAAAGGTAATATGGATATTGATGAGGGTAATCATTCTGAAGAATGTAATGAAGAAACACTAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACCCTAAAGCTCCTCAAGAAAATCCTAAAATGCTAGCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTTACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAACGCTCTTCAGTTAAATAATACAGAATTGTTAAGATGTCGAATCAGAGTTGTTATAGCTCCACAAAAGAATAAGCATAGAAGTTTCCATGTTATTTCTAGCAACTCGAGTCACTCATTTCAAAGGAGTGAAGGAACTCAGCCTGTGAAAGGTTCAGAGATTTCAGGGGACTGTGAACAAGAAACTGAGCCAAAACTAATTGCTACTTGCAAAGAACCAAGTGCTGCATCAAAGACAATATATGCTAAAAACTTGGCATACAGTATGGAGCAGGATGATATGGAATATCTTTTCAAAAATTGTGGAGAAATTGTTAGTATCCGCCTACATACAGATCATAACAGGCGGTTTAAAGGCTATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATACAGTATATCTGGGACGTCGTGTTGGAGTTTTTATAGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAGACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTCTTGGGAAAGTTCTAAAAGAGTAGCTACTTTGAAAGAACAAAATGCTCCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCATCTACATAGGAATCCTGATGGGAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCAAAAAAAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATTGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGATCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGATAAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTCAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGTTAGGAGGTTTCCACTTGAGAGTCGAAAAAGCAAAGCCTCGACGTGAAAACCAGGGTATAGGTGGTGGTAGAGGTGGTGGTGGTGGTCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAATGGGTTGGGGACGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGGCACAGGGAGGAAGACCCACTCTTACTCATGA 2034 0.4105 MGNKSDPKAGATAVPPPRIGKREGENEDEQQVNAKKHKRHEVAEEQRIMDEIVSDDSFEDFEPDKNPEAKKDSLSKQEKKGKPDSANCSGSLESLADGSEEGKGNMDIDEGNHSEECNEETLEKMQVLPVKSSENSEKGIEEKDPKAPQENPKMLATPNERNAGSKTIVTRNLSYSVERADLENLFKECGEIVDVRLHTDAEGRFRGFGHVEFATAEAAQNALQLNNTELLRCRIRVVIAPQKNKHRSFHVISSNSSHSFQRSEGTQPVKGSEISGDCEQETEPKLIATCKEPSAASKTIYAKNLAYSMEQDDMEYLFKNCGEIVSIRLHTDHNRRFKGYGHVEFATTEAAQKALELNNTVYLGRRVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSSWESSKRVATLKEQNAPSKTIYVKNLSYRVERADMENLFKECGKIVDVHLHRNPDGRLNGFGQVEFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERDQSPTVFVTGFDSSLPAEKIKASLEEHFGSCGEIQRISIPTFHDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFHLRVEKAKPRRENQGIGGGRGGGGGHQFGGRDGSGYTSRMGWGRSGGGGWHSLHFSDEGTGRKTHSYS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02575 677 MobiDBLite consensus disorder prediction 620 649 - -
Gma09g02575 677 MobiDBLite consensus disorder prediction 379 401 - -
Gma09g02575 677 CDD RRM1_NUCLs 438 514 IPR034349 -
Gma09g02575 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 374 IPR000504 GO:0003723
Gma09g02575 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 58 384 - -
Gma09g02575 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 541 676 - -
Gma09g02575 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 400 532 - -
Gma09g02575 677 MobiDBLite consensus disorder prediction 135 149 - -
Gma09g02575 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 618 IPR000504 GO:0003723
Gma09g02575 677 MobiDBLite consensus disorder prediction 1 160 - -
Gma09g02575 677 Gene3D - 385 519 IPR012677 -
Gma09g02575 677 Gene3D - 94 250 IPR012677 -
Gma09g02575 677 Gene3D - 252 384 IPR012677 -
Gma09g02575 677 MobiDBLite consensus disorder prediction 379 407 - -
Gma09g02575 677 MobiDBLite consensus disorder prediction 20 83 - -
Gma09g02575 677 SUPERFAMILY RNA-binding domain, RBD 524 647 IPR035979 GO:0003676
Gma09g02575 677 SUPERFAMILY RNA-binding domain, RBD 157 259 IPR035979 GO:0003676
Gma09g02575 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 242 IPR000504 GO:0003723
Gma09g02575 677 MobiDBLite consensus disorder prediction 253 278 - -
Gma09g02575 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 400 532 - -
Gma09g02575 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 541 676 - -
Gma09g02575 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 58 384 - -
Gma09g02575 677 SUPERFAMILY RNA-binding domain, RBD 294 386 IPR035979 GO:0003676
Gma09g02575 677 MobiDBLite consensus disorder prediction 658 677 - -
Gma09g02575 677 MobiDBLite consensus disorder prediction 100 122 - -
Gma09g02575 677 CDD RRM2_NUCLs 538 616 IPR034350 -
Gma09g02575 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 513 IPR000504 GO:0003723
Gma09g02575 677 MobiDBLite consensus disorder prediction 253 270 - -
Gma09g02575 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 611 IPR000504 GO:0003723
Gma09g02575 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 506 IPR000504 GO:0003723
Gma09g02575 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 367 IPR000504 GO:0003723
Gma09g02575 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 236 IPR000504 GO:0003723
Gma09g02575 677 Gene3D - 520 658 IPR012677 -
Gma09g02575 677 SUPERFAMILY RNA-binding domain, RBD 430 526 IPR035979 GO:0003676
Gma09g02575 677 SMART rrm1_1 438 509 IPR000504 GO:0003723
Gma09g02575 677 SMART rrm1_1 167 238 IPR000504 GO:0003723
Gma09g02575 677 SMART rrm1_1 538 614 IPR000504 GO:0003723
Gma09g02575 677 SMART rrm1_1 299 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02575 Gma-Chr9 51041087 51062255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02575 417 625 Eukaryotic Initiation Factors Gene Family AT2G36660 23.041 3.49e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02575 - - gmx:102664796 1286.94