Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02541 ATGACAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATGTTGAGCAAGCACTCATTGCCATAAAAAAAGGGACTCAATTAATAAAGTACAGTCGAAAAACCAAGCCAAAAGTTTGCCCATTCAGACTTTCTCTGGATGAAACAACACTAATTTGGATTTCTCACAAGAAGGAAAGGAAATTGAATTTATCGTCAGTTTCACGTATTATCCCTGGACAAAGAACTGTAGTCTTTAGAAGATATTTACAGCCAGAAAAAGATTACCTATCGTTTTCACTTGTTTATAGTAACGAGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGGCAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTAGGCGCATTGGAAGTGAATTATTTGATGATGGTGTTGATTTTACTCCAAAAGGTCGTCCTTTTGGTGCAGCACTAGAGTTTGGCATATGCATCACTCGTAATAACAAGGTCGCTTTTGATTTTGCTTCTCATGAGCCTTCATTGAATTTGGTAACCAGCACAGATGTGGGGTTAGAGAGTGCTAATAACATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTCAGCGTGTCGAGTACACCAAGTGTTTCGAGCACAGGATCGGGACCAGATGACATAGAATCACTAGGAGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGTGTTTCACTTGATGGATTTTCCACTCAGGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGAGGCACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTCACTTGGGGAGAAGAATGTGGTGGAAGACTTGGTCATGGAATTGATAGAGATTTCGGTCGCCCTCAACTTGTTGAATTTTTGGCAGTTACTAACATTGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTTTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATACAATGTTGGACTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAAAGAATTAGTACTGGCCCTTTAGAAGGGCTTCAAGTTATATCCGTTGCATGTGGCACATGGCATTCAGCACTAACAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGGACATTTGGAGTTTTAGGCCATGGAAACAGAGAAAGTATTCCATATCCAAAGGAGGTGCAATTGTTAAGTGGACTGAAAACCATTCAGGTTTCATGTGGAGTGTGGCACACTGCAGCTATTGTAGAGGTTACTTTTCAATCCGGTTCATATGTTTCTTCTAGGAAGCTTTTCACTTGGGGAGACGGCGACAAATATCGGTTGGGACATGGAAACAAGGAAACGTACCTTCAACCAACTTGTGTCTCTGCACTTATCGAGTATAATTTCCACCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCACATTTTTACTATGGGAAGCAATGAAAATGGTCAACTAGGAAACCATTTGGCTGATGGAAAAGTACCTATCCTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGTAATATCATGTGGATCTCATCATGTTGCTGCCTTGTCATCAAGAAGTGAATTGTATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCACCAACAATAGTAGAATCCTTAAAAGATAGGCATGTAAAGAATATTTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCACGGGTTGTAGACAACCATTTGGATTCACTAGAAAGAGGCACAATTGCTACAATTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCATCATTGGCTCCAACACCAGGAAAACCTCATCGCGTGTGTGACTCTTGTTATAACAAGCTTAAAGCTGTTGAGGCATGTGCTAGTTCTAATCTTCATAGGAAAATGACCACAACACCTCGTAATTCCTTAGATACCAGGGAAAGATTTGGTCAAGGAGATGTAAAGTCTTCAAGACTAATTTTGCCTCCTATCACAGAACCAATGAAATTTCATCAGATAATGATGGCTAATAAGATGGGAAGCAAACATGATTATTCTTCCATGTCTCCAGCATCCCAAGTTCCATCACTTTTACAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCAACTCAAAATGTTTTGAGGTCTGCTATAGCTCTTAGTCCACCACCAACTCCACCTCTCAATTCAAGACCAACATCTCCTTATTCAAGAAGGGCAAGCCCTCCACGTTCTAGAACTCCGGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAAATGCAAAACCAAATTCGAAGTGTAAGGCTAAAAAATGACATGGAAATTCAGAAGCTCCAAAAAAATGTCATGGAAGCTACCTCCTTTGCTGCAGAGGAATCTTCTAAGCATAAAGCCATGAAAGAAATTTTTGAGTCTACTGTGGATCAGATGAAGGAAATGATTGAGAAGTTGCCTCCAGACGTTTTAGATAGTGGAAATTTGAAAGTCGTGCTTACTCGAGCTGAGAATTTTCTAAAAGAAAATTCAGAATTTGAAACACCATCAAGTGCGAAGTCTCAACAACAACATGCACTTAATACACCTAACTTAAATACTAGCTCTTCTAAATTGCAAGAACATAGAATAGAAGAAAATAATGAAACTGTAGATGAAGGAAATGTTATTCAAGAAAGCAATAACTCATCTTTATCAAACAACGAGGCATCAATGCCTTCACAAAATGATTCAAAATCCCAAGACTCTTCAAGACCAGGCAAAGAAGGAGAAACAGAAGTCATTGAATTTGAACCTGGGGTACATGTGACACTAATAGTAAAGCCTGGTGGTGTCAGATTTTTCAAACAAGTTAAATTCAGTAAGCGAAGATTCCGTGAACATCAAGCAAAAGAGTGGTGGAGCAAAAATAAAGATAGAGTGCATAGGAAATATATTGCTCCACAAACTACAAATTCCGAAGGTACCGGATCATCTAACACTCTACCACCACCACCACCTACGAAAGAAAATATTGAGACAGTGTCTTCCTAA 3237 0.3957 MTDPASYGSLERDVEQALIAIKKGTQLIKYSRKTKPKVCPFRLSLDETTLIWISHKKERKLNLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYSNEERTLDLICKDKDEAEVWFTGLKTLISTGKLRRIGSELFDDGVDFTPKGRPFGAALEFGICITRNNKVAFDFASHEPSLNLVTSTDVGLESANNMQPRTSIGDGFRVSVSSTPSVSSTGSGPDDIESLGDVYIWGEVWADGVSLDGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFGRPQLVEFLAVTNIDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKRISTGPLEGLQVISVACGTWHSALTTSNGKLFTFGDGTFGVLGHGNRESIPYPKEVQLLSGLKTIQVSCGVWHTAAIVEVTFQSGSYVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHIFTMGSNENGQLGNHLADGKVPILVQDKLVGEFVEVISCGSHHVAALSSRSELYTWGKGANGRLGHGDIEDRKSPTIVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKASLAPTPGKPHRVCDSCYNKLKAVEACASSNLHRKMTTTPRNSLDTRERFGQGDVKSSRLILPPITEPMKFHQIMMANKMGSKHDYSSMSPASQVPSLLQLNDIAFGNSISSTQNVLRSAIALSPPPTPPLNSRPTSPYSRRASPPRSRTPGFSRSLIDSLRKTNELLNQEVSKMQNQIRSVRLKNDMEIQKLQKNVMEATSFAAEESSKHKAMKEIFESTVDQMKEMIEKLPPDVLDSGNLKVVLTRAENFLKENSEFETPSSAKSQQQHALNTPNLNTSSSKLQEHRIEENNETVDEGNVIQESNNSSLSNNEASMPSQNDSKSQDSSRPGKEGETEVIEFEPGVHVTLIVKPGGVRFFKQVKFSKRRFREHQAKEWWSKNKDRVHRKYIAPQTTNSEGTGSSNTLPPPPPTKENIETVSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Gma09g02541 1078 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 952 982 - -
Gma09g02541 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1055 - -
Gma09g02541 1078 Gene3D - 12 129 IPR011993 -
Gma09g02541 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Gma09g02541 1078 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Gma09g02541 1078 ProSiteProfiles BRX domain profile. 992 1047 IPR013591 -
Gma09g02541 1078 CDD PH_PLC_plant-like 12 124 - -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 392 IPR000408 -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Gma09g02541 1078 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Gma09g02541 1078 Pfam Transcription factor BRX N-terminal domain 861 895 IPR027988 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 790 809 - -
Gma09g02541 1078 CDD FYVE_like_SF 621 673 - -
Gma09g02541 1078 SUPERFAMILY FYVE/PHD zinc finger 611 686 IPR011011 -
Gma09g02541 1078 Gene3D - 203 452 IPR009091 -
Gma09g02541 1078 Gene3D - 453 624 IPR009091 -
Gma09g02541 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 683 IPR013083 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 776 809 - -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Gma09g02541 1078 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 284 IPR000408 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 912 995 - -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 392 441 IPR000408 -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 338 387 IPR000408 -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 457 503 IPR000408 -
Gma09g02541 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 1039 1078 - -
Gma09g02541 1078 Pfam FYVE zinc finger 611 677 IPR000306 GO:0046872
Gma09g02541 1078 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1055 - -
Gma09g02541 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Gma09g02541 1078 MobiDBLite consensus disorder prediction 912 939 - -
Gma09g02541 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Gma09g02541 1078 Pfam Transcription factor regulating root and shoot growth via Pin3 994 1046 IPR013591 -
Gma09g02541 1078 SUPERFAMILY PH domain-like 13 123 - -
Gma09g02541 1078 Coils Coil 813 840 - -
Gma09g02541 1078 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Gma09g02541 1078 SMART fyve_4 609 678 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02541 Gma-Chr9 50707081 50712699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02541 995 1047 Major Intrinsic Protein MIP AT1G31880 39.623 1.59e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02541 - - gmx:100776643 2128.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01946 18 52607251 52614506 Gma09g02541 09 50707081 50712699 GST