Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02478 ATGAGAATGGCAATAATGTTTATAAAAGATCCCACTCTCCGCTTCATCGTGATACCTCACTCTCAGATGGCCGCAAATTCTGGGAATATCTCGTTTGCGTCGTCTCAGTCTAGTTCACAGATTCATGGGAGCACTGATACTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACCTGATAATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTACCCAAAGCTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAATAGTTCTGAATCCGTTGAGAATAATTTCTCACAACAGATTCCCCATGTGGTTAATACTGTGAGACAACATCAGTCAGCTGTGTCTGGGGAGGATGATCAACTTGTAGATGGTGATACCCCTGCTTGGTCATTGCAATATGCTAGTACACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTCTTTATGGTGAAAATGAATCTAGTGCGAGTTTTAGACAGTACAGAGTTCCCCATGGCGAGACTGATTCTTTCTCTCACAGTGCTTATGGAGGCGACTCAGATATCTCTATGGATACTCATAGTTTTGAAGGCACTGGAGTCTTTAATTTACCAGATGAAGGAGATGAGTTTGACAGTGATACTGACATAGATCCAATGCATGCTGGTCTCAGCCAATGGATTTCTACTGATGAAGATGATGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGATAGGGAATGGGAATTAGCCGAGGCTGAGGAAGCTGAAGCCACATCCCACCTTCAAATTTTTTTCACCTCTAGTCCAAGTGAGAGCAGGGATCGCATTAATTCTACTGAATCTGGGGGAATGTTTAGCCAGATAATCCGAGAGACCTGGCATGGTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACATTTTGAAGATCTGCTTGAGCATCTGGCTGAGAATGACAGCTCAAGACGAGGAGCGCCTCCTGCTGCTGTGTCTTTCGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAACATGAGAAGCACGGCGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCCCGCACTGAAGTAAATCAACTTCCATGCTCTCACCTTTATCACATCAATTGCATTTTGCCATGGTTGAGTGCCCGAAATTCATGTCCTCTTTGTCGGTACGAACTTCCAACTGATGATAAGGACTATGAAGAGGGAAAGCAGAACATTGATAGTAGAAATGTGATCCATGAGAGGCAACGAATAGATGTAACAGATGATAGTTATTCTGATGTTTCTGATGGAGATGAGGTGAATGGTAGTGGTCAAGGTGGAATACGGCAAAGACTTCTGAGCTCAGGTTCCACTGTGGATTCTTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCTTGTGGTTGGGTAACAACTCTCAGAATGAAGGAAGTAGACATCTGGGCAGTCACTACTTATCCGGGCAAAACCAACACGCTGTTCATGCTTATTCCTCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGGTGGTGGTGCCCATTTTAA 1722 0.4454 MRMAIMFIKDPTLRFIVIPHSQMAANSGNISFASSQSSSQIHGSTDTVQVAVCSLCQKALSPDNEMASDLASSGVCGDCKFLLLEDFGNHTVTQSSRRRLRGRFRHNSSESVENNFSQQIPHVVNTVRQHQSAVSGEDDQLVDGDTPAWSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWNSLYGENESSASFRQYRVPHGETDSFSHSAYGGDSDISMDTHSFEGTGVFNLPDEGDEFDSDTDIDPMHAGLSQWISTDEDDEEEEEEEEEGDREWELAEAEEAEATSHLQIFFTSSPSESRDRINSTESGGMFSQIIRETWHGFEDVDLPHGANFGDYLDARHFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPRTEVNQLPCSHLYHINCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDSRNVIHERQRIDVTDDSYSDVSDGDEVNGSGQGGIRQRLLSSGSTVDSSATRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSQNEGSRHLGSHYLSGQNQHAVHAYSSPNQRESRSRRWWCPF 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02478 573 Pfam Ring finger domain 391 432 IPR001841 -
Gma09g02478 573 MobiDBLite consensus disorder prediction 258 278 - -
Gma09g02478 573 SUPERFAMILY RING/U-box 374 438 - -
Gma09g02478 573 CDD RING-H2_PA-TM-RING 390 432 - -
Gma09g02478 573 ProSiteProfiles Zinc finger RING-type profile. 391 432 IPR001841 -
Gma09g02478 573 PANTHER OS06G0101300 PROTEIN 270 497 - -
Gma09g02478 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 438 IPR013083 -
Gma09g02478 573 SMART ring_2 391 431 IPR001841 -
Gma09g02478 573 MobiDBLite consensus disorder prediction 465 486 - -
Gma09g02478 573 MobiDBLite consensus disorder prediction 218 278 - -
Gma09g02478 573 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 270 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02478 Gma-Chr9 50121761 50129144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02478 44 573 C3H Transcription Factor Family AT5G01980 43.297 5.20e-122 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02478 - - gmx:100797923 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02021 18 53512877 53521818 Gma09g02478 09 50121761 50129144 GST