Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02450 ATGGTGACTAATCTTCCTGCAACAAAGTCCACCAACACAACGACGTCGTTACAGGAGAAACGACACCGTTCTATCTTCGAAGTTCCACCGAACTTCTTCGATTGTTGTCGCCTTCTCCCTTCTCCTCACTCATCCGTTTCCGACCACTACAGCGTATCCAGAACCCAAACCCTCGAACCATCCTCAAACGACGACGTCGTTTTGGATGCCCCTCAAAACGCGGTCGTTTCCGCGCCTAGGTGGACCTGCAATACCTGCAAGACTCAATTCGATTCCCTTCAGGACCAGCGTTCCCATTTCAAATCCGACATTCATCGATTCAACGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTTCTGACATCTGAATTTGTCAAAGACTATGATGTGTCAAGTATATCAGGATCAGAAATTGACGATGATAGTGAAACTGAGTCTCAGAGTCAAAGTGTATTGTGTGACAAATCTAGCAAAAGTTTTAAAACGAAACTATTCTTCCGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGTTTGATTATGAATGTGACTGAAAATGTATTGTATGATAATGAAAAGGCTGAGAATCAAGTGGTTGAGAAGTTGAAATCTTTGACTGCTGAGCCCAGAGACAATACCTATTTGAGGATTGTTCTGCTTGCGTCTGGTGGGCACTTCGCAGGTTGTGTCTTTGACGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCGAAGGCAGGAAAAAAACAATCATCTAAAGATGCTTCTGGCAGGGCTGCTCATTCTGCTGGGGCTTCACTTCGTCGATATAATGAAATCGCATTGAAGAAGGAAGTTCATGAACTGTTCACTGATTGGAAACCTTATTTTGATGCTTCCAATTGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAGAGATCGTACTTTACCAATCAGCAGTGTGCTATTAGAAATATTGCTTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGGGTATATAGCCAGTTGATCCAGGTAACCTATGAAGCAGATGAAAAGGAAGTTTTGCAAAGCAACCAAGAGGATTCAGTATCAATTCACATTTCTAAAATAAATGTCAGTCCAACCTCCAGCAAGGGGGACATGGCTGAGTTGGATGACAAAGATAAAGCTGAAGCTTTTTCAAGTAAACAAAATGATGAACTCCCAATTTCAAGTAATGGAGAAAGTGAGGATGATCTATCTTGTAAATCAACTCCTTTACATCAGGCAGCACAATCGGATGACTCTCTAAAGGTTTTAGAGTTCTTGGAACAGGGCTTGGATCCCTGCATCAAAGATGAAAGGGGGAGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCGTCAAATCTTGACAAATGGGATTGGCAAGCTGCAAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCTTGCCTAAGAATGATTCGAAAACTATAGAGAAGCAAGTAACTGCTTCAACATCGGTTAAGGGACAATCTCAACTAAAAAGTGGTGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGAGAGCAGCTGCTGCCGAGAAGAGAATAGCTGCCCTCAAAATTCAAGCTAATAGTGCAACCACTGCACCAACCATGTCAGAACCTAAAAGTGGATTAGCCGGTGACATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGACCAATGA 2001 0.4243 MVTNLPATKSTNTTTSLQEKRHRSIFEVPPNFFDCCRLLPSPHSSVSDHYSVSRTQTLEPSSNDDVVLDAPQNAVVSAPRWTCNTCKTQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDVSSISGSEIDDDSETESQSQSVLCDKSSKSFKTKLFFRLQTGQRVSVWKCLIMNVTENVLYDNEKAENQVVEKLKSLTAEPRDNTYLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNEIALKKEVHELFTDWKPYFDASNCIFIHAPSSSRQLLYDGERSYFTNQQCAIRNIALTVRRPTFREAKRVYSQLIQVTYEADEKEVLQSNQEDSVSIHISKINVSPTSSKGDMAELDDKDKAEAFSSKQNDELPISSNGESEDDLSCKSTPLHQAAQSDDSLKVLEFLEQGLDPCIKDERGRTPYMLAHDKEVRNTFRRFMASNLDKWDWQAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATLPKNDSKTIEKQVTASTSVKGQSQLKSGVQLSKEDQIRMAQAAEREKRAAAAEKRIAALKIQANSATTAPTMSEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02450 666 Coils Coil 578 614 - -
Gma09g02450 666 ProSitePatterns Zinc finger C2H2 type domain signature. 83 105 IPR013087 -
Gma09g02450 666 Pfam Vms1-associating treble clef domain 629 662 IPR041540 -
Gma09g02450 666 Gene3D - 396 497 IPR036770 -
Gma09g02450 666 SUPERFAMILY beta-beta-alpha zinc fingers 79 112 IPR036236 -
Gma09g02450 666 MobiDBLite consensus disorder prediction 553 572 - -
Gma09g02450 666 Pfam Bacteroidetes VLRF1 release factor 225 363 IPR041175 -
Gma09g02450 666 MobiDBLite consensus disorder prediction 409 437 - -
Gma09g02450 666 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 662 - -
Gma09g02450 666 MobiDBLite consensus disorder prediction 1 19 - -
Gma09g02450 666 MobiDBLite consensus disorder prediction 413 437 - -
Gma09g02450 666 Coils Coil 507 545 - -
Gma09g02450 666 MobiDBLite consensus disorder prediction 1 21 - -
Gma09g02450 666 SUPERFAMILY Ankyrin repeat 432 485 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02450 Gma-Chr9 49865161 49871078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02450 20 613 C2H2 Transcription Factor Family AT1G01930 52.124 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02450 K26089 - gmx:100527709 1212.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02450 09 49865161 49871078 Gma09g02450 09 49865161 49871078 ECH
Gma18g02057 18 53913599 53919256 Gma09g02450 09 49865161 49871078 GST