Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02448 ATGAGTTTCTTGCAGGGAATAATTGATTCCTTCAACTCCATCTTCACACATGATAACAACAACAATTATCACAACACCAATTCTCCTTCTTCTTCTTCCTCAACGAATCGAATGGAAGCTTCTCCTCCTCCTTCGGTTTCGAACGAGCGCGTTGCATACAAGCTCAAAGGCTACTTCGATTTAGCAACGCAAGAGATCGCGAAGGGCGTTAGGGCAGAGGAATGGGGCTTGATCGACGACGCGCTTCTTCACTACCGTAACGCGCACTCGATCCTCCTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTACCAGTGAACAGCAGAAGGTGCAATCGTATCGAGAGAAGATATCTAAATGGCAGAGTCAGGTTTCTGAGAGGTTGCAGACTCTCGCTAGACGAGCTGGCAGCTCATCTGCAAATCAGAGCACCTCAAAACTTGGTCAAACTGCTGCCGCTCCAATTAAGACATTGAGTACTAGAAAAAATGTGTTACAAAAGCCCCCTCAAAGAGGAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCATCTGGTGTAAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAAAGAAGAGACTTGTTTACGGGACTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTAGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGGAAGCTTCTGCTGAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAgtagagatcttgagaggcttgtaaaagagactgaacGATATTCTGGCAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGTTGACATTCTTACTGTAAAGGCTAATCAGGTAAGAGGACTGAGATACGAGGATTTTAAGAAGGCAATGACTATCATTAGGCCGAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGAATTTGGCTCTAATTGA 1461 0.4203 MSFLQGIIDSFNSIFTHDNNNNYHNTNSPSSSSSTNRMEASPPPSVSNERVAYKLKGYFDLATQEIAKGVRAEEWGLIDDALLHYRNAHSILLEANSTPVPSYITTSEQQKVQSYREKISKWQSQVSERLQTLARRAGSSSANQSTSKLGQTAAAPIKTLSTRKNVLQKPPQRGGQVNKVGSPKSSQASGVNYDDKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEAEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETERYSGSDLQALCEEAAMMPIRELGVDILTVKANQVRGLRYEDFKKAMTIIRPSLNKSKWEELERWNEEFGSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02448 486 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
Gma09g02448 486 SMART smart 55 132 IPR007330 -
Gma09g02448 486 MobiDBLite consensus disorder prediction 135 190 - -
Gma09g02448 486 CDD AAA 236 381 - -
Gma09g02448 486 Gene3D - 47 137 - -
Gma09g02448 486 PANTHER BNAC04G50250D PROTEIN 4 486 - -
Gma09g02448 486 MobiDBLite consensus disorder prediction 22 47 - -
Gma09g02448 486 Gene3D - 210 480 IPR027417 -
Gma09g02448 486 SMART AAA_5 247 383 IPR003593 -
Gma09g02448 486 CDD MIT_spastin 55 133 - -
Gma09g02448 486 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
Gma09g02448 486 MobiDBLite consensus disorder prediction 22 43 - -
Gma09g02448 486 Gene3D - 382 464 - -
Gma09g02448 486 PANTHER AAA DOMAIN-CONTAINING 4 486 - -
Gma09g02448 486 MobiDBLite consensus disorder prediction 135 172 - -
Gma09g02448 486 Pfam AAA+ lid domain 406 436 IPR041569 -
Gma09g02448 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 483 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02448 Gma-Chr9 49849731 49855678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02448 210 436 Calmodulin-binding Proteins AT3G56690 42.797 5.15e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02448 K13254 - gmx:100786789 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02448 09 49849731 49855678 Gma09g02448 09 49849731 49855678 ECH
Gma18g02059 18 53935703 53943458 Gma09g02448 09 49849731 49855678 GST