LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g02438	ATGGGTAGAGGAAGGGTTGAGCTGAAGAGGATTGAGAACAAAATAAATCGGCAAGTTACCTTCTCGAAAAGAAAGACAGGTTTGTTGAAGAAAGCCAAAGAGCTCTCAGTGCTGTGTGATGCTGAGGTTGCCCTTGTCATTTTCTCACCTCGTGGCAAGCTCTTCACCTTTCCAGACGATGCTCAAAGTATTATAAAAACCTATGATCGATACCGGAAGTACTCTAATCAAGATGGCAATGTTGAACTTGAAAATCAGGGCTGGTACCAAGAAATGTCAAAACTAAATGAAAAGTATGAAGCTGTTCAAAAGACACAAAGGCGTTTGCATGGGGAAGATCTTGGACCACTGAGCATAAAAGAGTTGCAAATTCTTGAGGAGCAACTTGAAAAAGCTTTATCACAAGCTAGGCAGAGGAAGACACAACTGATTATTGAACATGTGGAAGAGCTTCGCCAAAAGGAACGTCATCTTGAAGACCTGAATAAAGACCTTAGACTCAAGCCTCCTTTTCAGCTTGAGCCTTATGGATTTAATCTCAAAGCAAGTCTGTGGGGCTCTACTTCCACTAGTGCTGCTGGAGATGGGAGCTTTCCCTTGCTGCCTTCCCAAACCTACCCTGAGCCTTTCTTGCAAATAGGGTATTCTGTTCAAGGTGAGCCATCCATTGTCCCAAAGACCATGGCCAGTGAGACTAATTTTCAAGGATGGTTCCTCTGA	720	0.4347	MGRGRVELKRIENKINRQVTFSKRKTGLLKKAKELSVLCDAEVALVIFSPRGKLFTFPDDAQSIIKTYDRYRKYSNQDGNVELENQGWYQEMSKLNEKYEAVQKTQRRLHGEDLGPLSIKELQILEEQLEKALSQARQRKTQLIIEHVEELRQKERHLEDLNKDLRLKPPFQLEPYGFNLKASLWGSTSTSAAGDGSFPLLPSQTYPEPFLQIGYSVQGEPSIVPKTMASETNFQGWFL	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma09g02438	239	ProSiteProfiles	K-box domain profile.	85	179	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma09g02438	239	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	185	-	-
	Gma09g02438	239	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Gma09g02438	239	Gene3D	-	13	91	IPR036879	GO:0003677\|GO:0046983
	Gma09g02438	239	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 6	1	185	-	-
	Gma09g02438	239	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Gma09g02438	239	Coils	Coil	119	168	-	-
	Gma09g02438	239	Pfam	K-box region	84	168	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma09g02438	239	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gma09g02438	239	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g02438	Gma-Chr9	49721879	49727253	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma09g02438	1	239	MADS-box Gene Family	AT2G45650	54.724	5.24e-83	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma09g02438		K-box	1.3e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma09g02438	K09264		-	gmx:100797002	432.565

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma09g02438	09	49721879	49727253	Gma09g02438	09	49721879	49727253	ECH
	Gma18g02072	18	54198129	54204023	Gma09g02438	09	49721879	49727253	ECH
	Gma05g00480	05	4560012	4567301	Gma09g02438	09	49721879	49727253	ECH
	Gma17g01233	17	10881833	10890808	Gma09g02438	09	49721879	49727253	ECH