Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02436 ATGGTGAGAGGAAAGACTCAGCTGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTTTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGACACAATTGAACGATACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCTTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAGTGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCCCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACTCAGGTCTAGCTATTGA 636 0.4355 MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSSVRARKNQVYKEQIDQLKEKERALYAENARLCEQYGGIQPQPATKDPKEIQPYAESSPSSEVETELFIGLLRSSY 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02436 211 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02436 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Gma09g02436 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02436 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Gma09g02436 211 Coils Coil 143 170 - -
Gma09g02436 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 PANTHER MADS BOX PROTEIN 1 207 - -
Gma09g02436 211 Coils Coil 73 107 - -
Gma09g02436 211 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gma09g02436 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma09g02436 211 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Gma09g02436 211 MobiDBLite consensus disorder prediction 173 194 - -
Gma09g02436 211 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02436 Gma-Chr9 49698801 49713886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02436 1 156 MADS-box Gene Family AT2G45660 78.205 1.06e-87 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma09g02436 K-box 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02436 - - gmx:100784678 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02436 09 49698801 49713886 Gma09g02436 09 49698801 49713886 ECH
Gma18g02074 18 54213739 54232056 Gma09g02436 09 49698801 49713886 GST
Gma09g02436 09 49698801 49713886 Gma07g00727 07 7664050 7682928 PCT
Gma07g00727 07 7664050 7682928 Gma09g02436 09 49698801 49713886 PCT