Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02427 ATGGCAGCTCTAGTAGGAGAGGGGGAAGGACCACTATGGTGTGTGATATGCGTGAAGTGTCTCCCAGAATATGTAATGGAGGATCGACTAAGGGAATTATTTTCTGAAAAAGGAGAAATCACTGATGTCAAGCTTATGCGTACCAATGGTAAGAGTCGCCAATTTGCTTTTATTGGATTTCGTGAAGACCATCAAGCTCAGGAAGCTATTCGATATTTCAACAAAAATTATCTTGGTGCATCTAAAATTACATGCGAGGCCTGTTGTTTATGTTATTTTGACATTGTTGATATTGATGACCCACAACTTCAACAATTTCTTCTGGTAATGCAACCTAGGGCTAGGGTTAAATTGTGGGTCAATGGCACACCCATTGCCTCATCCAATGTTTGCAACAAAGTTTCATCAGATGCAATTCATCCCATCTTAGTTCAAAGTGGCTCACTGATAGGAGGACTTTCAAACAATCCTAAACACAACAAGTCACGAACCTCAAGAAATGGTGCTGAAGAGTTAGATCTAGAGGATCAAGAAGATACTTGTGGAAAGGGTGTTGCCCATGATAAAGCTCAAGTGAATCCAGAAGCTGAAAAAGTAGTTTCTGAGTCCTGTCGATTGTTTGTCCATAATCTGCCCTACACAGCAACTACTAGTGAGGAAGAACTGCAACAACATGTCGGTAAGGTTCATGTGGTTGTCAATAAAAGTACAAAACTATCCAAAGGAATAGCATATATTCTTTTCTCAGGTCCAGAAATTGCAAGAAGGGATgctccattatacttggagtgggctccattatacttggagtgggctccTTCCAATATTCTTAGTCAAAGCTCAACATTTAAAAAAATGAAAATGAATAGTGGAATTGGTGAAAATGATGTCAAACAGCTGAAATTGGAGCAAAATGTATTAAGAATATCATATGTGGATATTGGTCCAGACAGAGTACAGGCTCGGACCCTGTTTGTCAAGAACCTAAATTTCAATACAACAGATGAGAGTCTGAGGAAACATTTTAGTGAAAACATGAAAGAGGGAGCAATTTTGAGTGTCAAGGTGAAGAAACATTTGAAAAATGGGAAAAATGTTTCCATGGGGTATGGATTTGTTGAGATTTACAGTGAGGGACAAGTACAAAAGACAATTGAGAAGGGCAAGAGTTTGACAAAGTTGCATGTAAAAGATGTTGCTTTTGAGGCAACAGAGAAGAGTCTGAGAGAATTGTTTAAACCATTTGGCGAGATTAAAAGCTGA 1263 0.3705 MAALVGEGEGPLWCVICVKCLPEYVMEDRLRELFSEKGEITDVKLMRTNGKSRQFAFIGFREDHQAQEAIRYFNKNYLGASKITCEACCLCYFDIVDIDDPQLQQFLLVMQPRARVKLWVNGTPIASSNVCNKVSSDAIHPILVQSGSLIGGLSNNPKHNKSRTSRNGAEELDLEDQEDTCGKGVAHDKAQVNPEAEKVVSESCRLFVHNLPYTATTSEEELQQHVGKVHVVVNKSTKLSKGIAYILFSGPEIARRDAPLYLEWAPLYLEWAPSNILSQSSTFKKMKMNSGIGENDVKQLKLEQNVLRISYVDIGPDRVQARTLFVKNLNFNTTDESLRKHFSENMKEGAILSVKVKKHLKNGKNVSMGYGFVEIYSEGQVQKTIEKGKSLTKLHVKDVAFEATEKSLRELFKPFGEIKS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02427 420 SUPERFAMILY RNA-binding domain, RBD 14 86 IPR035979 GO:0003676
Gma09g02427 420 Gene3D - 153 257 IPR012677 -
Gma09g02427 420 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 16 254 - -
Gma09g02427 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 406 IPR000504 GO:0003723
Gma09g02427 420 PANTHER RNA-BINDING PROTEIN 19-RELATED 295 420 - -
Gma09g02427 420 Gene3D - 390 420 IPR012677 -
Gma09g02427 420 Gene3D - 15 89 IPR012677 -
Gma09g02427 420 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 295 420 - -
Gma09g02427 420 Gene3D - 316 389 IPR012677 -
Gma09g02427 420 MobiDBLite consensus disorder prediction 154 175 - -
Gma09g02427 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 83 IPR000504 GO:0003723
Gma09g02427 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 386 IPR000504 GO:0003723
Gma09g02427 420 PANTHER RNA-BINDING PROTEIN 19-RELATED 16 254 - -
Gma09g02427 420 SMART rrm1_1 15 86 IPR000504 GO:0003723
Gma09g02427 420 SMART rrm1_1 323 397 IPR000504 GO:0003723
Gma09g02427 420 SMART rrm1_1 205 270 IPR000504 GO:0003723
Gma09g02427 420 SUPERFAMILY RNA-binding domain, RBD 200 256 IPR035979 GO:0003676
Gma09g02427 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 83 IPR000504 GO:0003723
Gma09g02427 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 274 IPR000504 GO:0003723
Gma09g02427 420 CDD RRM1_MRD1 16 86 - -
Gma09g02427 420 SUPERFAMILY RNA-binding domain, RBD 321 419 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02427 Gma-Chr9 49583186 49587633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02427 301 420 Eukaryotic Initiation Factors Gene Family AT1G34140 30.137 1.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02427 K14787 - gmx:100798742 229.565