Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02425 ATGGTATTTCAGAGCCACATTTGTTATAATGTAGTGGGCACACCATTCTTTTCTATAGCTGATGAACTTCCATCAAGAGAATTGGTGCAAAGAATGGCATGTGATGGAGGTGATCAAACATTCTTTGCCTTCGGGGGCAACGGCACTCAAAAGAGATTTATGGTTCAAAATGAAGAGGAGGATCCATGTGCCATATGCATCAATGCTTTCAACTCTGGTGATAATGCAGCAAGGTTGCCTTGCTCTCATGTCTTCCACCCTAACTGTATTTTGCAATGGTTTGTTCAGAAGAGTATGTGCCCTTTGTGCTGTTTCACTTGTAGTGATCGCGTCTTTTGA 339 0.4218 MVFQSHICYNVVGTPFFSIADELPSRELVQRMACDGGDQTFFAFGGNGTQKRFMVQNEEEDPCAICINAFNSGDNAARLPCSHVFHPNCILQWFVQKSMCPLCCFTCSDRVF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02425 112 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 55 105 - -
Gma09g02425 112 SMART ring_2 63 103 IPR001841 -
Gma09g02425 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 105 - -
Gma09g02425 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 111 IPR013083 -
Gma09g02425 112 SUPERFAMILY RING/U-box 55 107 - -
Gma09g02425 112 Pfam Ring finger domain 63 103 IPR001841 -
Gma09g02425 112 ProSiteProfiles Zinc finger RING-type profile. 63 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02425 Gma-Chr9 49571404 49571742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02425 59 103 C3H Transcription Factor Family AT4G12190 45.833 9.76e-12 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02425 - K19045 gsj:114396617 140.969