Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02393 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGGTGCCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAACTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGGTAAGATCTATATAATTTTATTCTTTCAAATATTCTTGTGTAATCTTCATTTACAGCATAAGACCCCCAACAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTATCACAAGAATTGCTTCAGATGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTCTACTGCAGGCATCATTTCCAACAACTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGCCACACAATCTCCTGCTGAACCTGCTGAACCTGCAGCTGAAGGAGAAGAAGAGCCTCCAAAGCCAGAAGAATCTGATTCTGAGAAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG 687 0.4192 MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKIYIILFFQIFLCNLHLQHKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNATQSPAEPAEPAAEGEEEPPKPEESDSEKHTEEKPQNEA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02393 228 SMART lim_4 114 166 IPR001781 -
Gma09g02393 228 SMART lim_4 9 61 IPR001781 -
Gma09g02393 228 PANTHER OS06G0237300 PROTEIN 1 215 IPR045268 GO:0051015
Gma09g02393 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma09g02393 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma09g02393 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma09g02393 228 Gene3D Cysteine Rich Protein 111 179 - -
Gma09g02393 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Gma09g02393 228 MobiDBLite consensus disorder prediction 184 228 - -
Gma09g02393 228 Gene3D Cysteine Rich Protein 4 72 - -
Gma09g02393 228 Pfam LIM domain 115 170 IPR001781 -
Gma09g02393 228 Pfam LIM domain 10 65 IPR001781 -
Gma09g02393 228 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 215 - -
Gma09g02393 228 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Gma09g02393 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma09g02393 228 CDD LIM1_SF3 6 68 - -
Gma09g02393 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 180 - -
Gma09g02393 228 MobiDBLite consensus disorder prediction 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02393 Gma-Chr9 49274543 49276337 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma09g02393 LIM 1.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02393 - K09377 gmx:100788569 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02393 09 49274543 49276337 Gma09g02393 09 49274543 49276337 ECH
Gma18g02126 18 54947176 54949110 Gma09g02393 09 49274543 49276337 GST
Gma09g02393 09 49274543 49276337 Gma07g00672 07 6968663 6970649 PCT
Gma07g00672 07 6968663 6970649 Gma09g02393 09 49274543 49276337 PCT