Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02390 ATGAAGAATAGAGATAGAGAGAAGAGCCCACCTAGGATGGGTTTAGGGCGAGGGTTGAACTCGAATCGTGGGTTTCAACCAAGGCCACAACAATATGTGCAGAGGCATATGGTTCAACATCGACATCATCTGCAACCATATCAACATAACCATCACCACCACCACCATCAGCAGCAACGACAACAACATCATCATCATCAACAACAACGACAATGGTTGAGAAAGGACCAGTTAAGTGGTGGGACCAACACCAATGTTGTTGAGGAGGTTGAGAAGACTATGCAGTCTGAAGCCATTAACTCAAGttcacaagattggaaggcaagactaaatattccaccacctgatacatgccataagacagaggatgtgacagcaactaaaggaaatgaatttgaggattactttttgaagcgcgagttgctaatgggaatatatgagaagggttttgaaaggccttctcctatccaagaagaatgcattccgattgctcttactggtagtgacattcttgctagggctaaaaatggaacaggcaaaacagctgccttttgtattcctgcattggaaaaaattgatcaggataatgatgttattcaagttgcaatattggtaccaacacgagaactggctttgcaaacatctcaagtgtgtaaagatctcggaaaacatttgaaaattcaagttatggttacaacaggtggtaccagcctgaaggatgatatcatgcgcttatatcaaccagttcatctgctagttggaactccgggaagaatattagatcttgcaaagaagggtgtttgcattctgaatgattgctctatgcttgttatggatgaggctgataagcttctctcccaagagttccaaccttcaatagagcagctgattcaatttcttcctggaaaccgtcaaatcctgatgttttctgctacatttcctgttactgtcaaggacttcaaagatcgatatcttcgtaagccatacatcgttaaccttatggatgagctaactctgaaaggtattacacaatattacgcatttctggaagagaggcagaaagtccactgcctaaatacacttttctctaagctgcaaataaatcagtcgatcatcttctgcaattccgtgaatcgggttgagctactcgccaagaaaatcacagaacttgggtattcatgtttctatattcatgcaaagatgttgcaagatcaccgaaatagagtgtttcatgacttctgcaatggtgcctgcagaaaccttgtttgtactgatcttttcactaggggaatagacatccaagcagtcaatgttgttattaattttgattttccaaagaactcagaaacttatctgcacagggttggtcgttcagggaggtttggacacctaggtttagcggtgaacttgatcacctatgaggatcgcttcaatttatataggattgaacaagaacttggcactgaaataaaacaaattccaccacacattgatcaggcaatatattgccgcattgGTTGA 1521 0.0927 MKNRDREKSPPRMGLGRGLNSNRGFQPRPQQYVQRHMVQHRHHLQPYQHNHHHHHHQQQRQQHHHHQQQRQWLRKDQLSGGTNTNVVEEVEKTMQSEAINSSSQDWKARLNIPPPDTCHKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEECIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNDVIQVAILVPTRELALQTSQVCKDLGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILNDCSMLVMDEADKLLSQEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYIVNLMDELTLKGITQYYAFLEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFCNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCRIG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02390 506 CDD SF2_C_DEAD 342 471 - -
Gma09g02390 506 MobiDBLite consensus disorder prediction 47 70 - -
Gma09g02390 506 Gene3D - 335 505 IPR027417 -
Gma09g02390 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Gma09g02390 506 MobiDBLite consensus disorder prediction 47 82 - -
Gma09g02390 506 Gene3D - 84 334 IPR027417 -
Gma09g02390 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Gma09g02390 506 SMART ultradead3 149 345 IPR014001 -
Gma09g02390 506 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Gma09g02390 506 CDD DEADc_DDX6 132 332 - -
Gma09g02390 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Gma09g02390 506 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Gma09g02390 506 SMART helicmild6 381 462 IPR001650 -
Gma09g02390 506 MobiDBLite consensus disorder prediction 1 27 - -
Gma09g02390 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Gma09g02390 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Gma09g02390 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 20 504 - -
Gma09g02390 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 20 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02390 Gma-Chr9 49243777 49254475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02390 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 37.433 9.03e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02390 K12614 - gmx:100788032 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02390 09 49243777 49254475 Gma09g02390 09 49243777 49254475 ECH