Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02382 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGGACAACCTGAGTTACATATTTCACCTAATATGCGTCCACTGTCTAATCCAAATCTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCGGCCCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCTAGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTACCGATGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCCATCCTGGAGCCTTGTCACAAAGCCAGAAACGGGGCAGAGGGCGCCCCCCGGGGACTGGGAAAAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGTTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACTGAAAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGCGGCGGAGTTGGTGGAGTGCTTATTGCATCAAGCCCTGTTCAGGTGGTAGTTGGGAGCTTTCTATGGGGAGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTTTCACTGAATAGCATCTCACAAAATCAAAACCTTCCTCCAACTCCCCCATCTCTAAGTCCTTGGTCAACATCACGTCCGTTGGACATGCGTAATTCCCATGTGGACATTGATTTAATGCGTGGGTGA 1026 0.4834 MDRGDQMALSGSYYMQQRGIPGSGGQPELHISPNMRPLSNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPGALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTENGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGAEVAVESDHQGVHNPVSLNSISQNQNLPPTPPSLSPWSTSRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02382 341 CDD DUF296 153 267 IPR005175 -
Gma09g02382 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 309 IPR039605 GO:0003680
Gma09g02382 341 MobiDBLite consensus disorder prediction 100 119 - -
Gma09g02382 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Gma09g02382 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Gma09g02382 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gma09g02382 341 MobiDBLite consensus disorder prediction 71 136 - -
Gma09g02382 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 309 - -
Gma09g02382 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Gma09g02382 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Gma09g02382 341 MobiDBLite consensus disorder prediction 273 287 - -
Gma09g02382 341 MobiDBLite consensus disorder prediction 273 341 - -
Gma09g02382 341 Gene3D - 154 296 - -
Gma09g02382 341 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02382 Gma-Chr9 49186702 49194001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02382 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.311 1.75e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02382 - - gmx:100814615 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02382 09 49186702 49194001 Gma09g02382 09 49186702 49194001 ECH
Gma18g02135 18 55008684 55014683 Gma09g02382 09 49186702 49194001 GST
Gma09g02382 09 49186702 49194001 Gma07g00661 07 6825444 6832122 PCT
Gma07g00661 07 6825444 6832122 Gma09g02382 09 49186702 49194001 PCT