Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02378 ATGGCAACTGATATGCAGAGGCTTGTTGGAACCAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGAGGATGATGATTATGAGGAAAATGGAGGTGAACAGGGGAATGCTTCAGTATCAGGGATGGTAGAGATTGATGATGGGAATGGGATAGGAACTGCCACTGGTGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCGGGTGGAGGTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAAAGGCGCCGCAGGGCCATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGgatgggtggttcttccagatggttctactttcccatcaagatctcagGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCTTGCGGCTTCACAACAGACTCCATCTGCTTCTCTCAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAATGCATGTCAAACAAAAGGTGTTTTTATGCCTACTCCGTCTCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATCGTCCTctgattgctggttcaatggataatgctgatgataagcagATTGCTGACTTGCCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTATCGTTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCCGATGGTCTACTAAAGCAGCTAAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGCTTAAGCTTAAGCTGCAGGTTGTAATTTCATTTCATGAATGTGGAGGCAATTTTGGCGATGATGTTTGTATTCCACTACCGCATTGGGTTGCTGAAATTGGTCGGAGCAATCCTGACATTTTTTTCACTGATAAAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGCCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATACTTTGAGGATGGGTTTATCTCCATGATTGAAATTGGACTGGGTCCATGTGGAGAGTTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTGTTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGCCATTCTATTTGGGCTAGAGGGCCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTGCTGCAAAGTTATCGGGTATTTATTGGTGGtacaagactgcaagtcatgctgctgaattaactgctgggtattataacccatgcaatcgtgatggttatgctGCAATTATGACAATGTTAAAGACAATTGGAGTCAGCTTAAACATTCCTTGTGTTGACTTGCACACATTTAACCAACAACATGAGGGCTTTCCAGAGACATTTGCAGATCCTGAGGGAATAGTCTGGCAATTGTTGAATGCCGGGTGGGATGTTGACCTACCAGTTACCGGTCAGAATGGATTTCCTTGCCTAAACAGAGTTGGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCTCTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACAACAAAACTTTGTAGAGTTTGAACGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTACAGGCTGAGGTTGTTGGCTCTGTTAGTGCCGATGAAGAAAATCATCCGGAGTTCCACTTGAAAAGATATGACTATTTTAGTTTTGAAATAGCACCTGATACATGCTCATCAGTGGAACATATATTGCATTTGAAACCTATAGAGGTAGATATCTTCCGAGGAATCACTCCTCCCGATGTTCCAAAATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTTATAGCTTGCATGCCTATTTTCTTCTTGTGGGGGATTTTAACATACCCATTATATATCAAGTTTATCGTCTCCGCGATGGGAAGAATTTTGCTAGAAGAAAAGTAGATGCAATTCAAAAGGGAAATGTGATATTCACTTTGCTGGCTTCATTTCAGTTTTACCACATATCCCCTAGCTCTGGTCAAGGAATTCTGCTCAAAATTCCGGAGCACATCTAA 2595 0.4062 MATDMQRLVGTSEDDEEMGMDVKDEDDEDDDYEENGGEQGNASVSGMVEIDDGNGIGTATGDNRFQQHQQFQEQVGTPGGGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGSTFPSRSQGQKPAGGNSTIVTSSSSLAASQQTPSASLRGVASGYRSPLEYNACQTKGVFMPTPSPYDLSSSSRSQTSMVGDGEAQRDNRPLIAGSMDNADDKQIADLPPRLPERDLAGTPYVPVYVMLSLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVISFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDKEGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGFISMIEIGLGPCGELRYPSCPVKHGWRYPGVGEFQCYDQYMLKSLRKAAEVRGHSIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKTIGVSLNIPCVDLHTFNQQHEGFPETFADPEGIVWQLLNAGWDVDLPVTGQNGFPCLNRVGYNKVLDNAKPMNDPDGRLFSSFTYLRLSPLLMEQQNFVEFERFVKRMHGEAVLDLQAEVVGSVSADEENHPEFHLKRYDYFSFEIAPDTCSSVEHILHLKPIEVDIFRGITPPDVPKFGKVFGGQIVGQALAAASKSVDCLKVVYSLHAYFLLVGDFNIPIIYQVYRLRDGKNFARRKVDAIQKGNVIFTLLASFQFYHISPSSGQGILLKIPEHI 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02378 864 CDD Thioesterase_II_repeat2 753 844 - -
Gma09g02378 864 Gene3D Hotdog Thioesterase 734 846 - -
Gma09g02378 864 MobiDBLite consensus disorder prediction 17 36 - -
Gma09g02378 864 MobiDBLite consensus disorder prediction 146 183 - -
Gma09g02378 864 MobiDBLite consensus disorder prediction 59 79 - -
Gma09g02378 864 Pfam Glycosyl hydrolase family 14 270 691 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 SUPERFAMILY (Trans)glycosidases 263 702 IPR017853 -
Gma09g02378 864 MobiDBLite consensus disorder prediction 209 227 - -
Gma09g02378 864 MobiDBLite consensus disorder prediction 1 97 - -
Gma09g02378 864 Gene3D Glycosidases 258 733 - -
Gma09g02378 864 Pfam Thioesterase-like superfamily 767 844 - -
Gma09g02378 864 Pfam BES1/BZR1 plant transcription factor, N-terminal 81 220 IPR008540 -
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 561 572 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 620 642 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 301 315 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 579 602 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 544 560 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 322 340 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 510 529 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 344 365 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 459 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 738 845 IPR029069 -
Gma09g02378 864 PRINTS Plant beta-amylase signature 671 685 IPR001371 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Plant beta-amylase signature 686 700 IPR001371 GO:0000272|GO:0016161
Gma09g02378 864 PRINTS Plant beta-amylase signature 427 436 IPR001371 GO:0000272|GO:0016161
Gma09g02378 864 PANTHER - 79 704 IPR001554 GO:0000272|GO:0016161
Gma09g02378 864 PANTHER BETA-AMYLASE 79 704 - -
Gma09g02378 864 MobiDBLite consensus disorder prediction 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02378 Gma-Chr9 49143307 49154429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02378 1 702 Glycoside Hydrolase AT2G45880 64.922 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gma09g02378 Glyco_hydro_14 2.6e-99 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02378 K01177 - gmx:100812659 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02378 09 49143307 49154429 Gma09g02378 09 49143307 49154429 ECH
Gma18g02145 18 55088196 55101535 Gma09g02378 09 49143307 49154429 GST