Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02358 ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAGGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTTGAACTTGCTTATAGTAAGCATTTGAGTTCTCTTGAGGCATGTTTGAAGAATGTTGCTGATGGTAAGCTTCCCGAGTGTGGTTTAGTGGATGATAGGGTTAAGTTTCACAAGCATTTGATGGAGGCACAAGCTGAATCCTTGTTGGATGATTCTGGTGAGAAAGAGGTGGGGGATGGACTCGAGAGGAGAGCGTGTTGCTGTCCGGATGGGAGGAAGTTGGGTGGTAGTAATAGAGTGAAGGGCGTGAAGCCGGAGTCAAATGTGGCTGAACTTGAGAGGGTATATGAGTATTTAGATGGGACAAAGTCGTGTGTTAGTGATAGTGTAAAGGGCAAGAAATCGGATTATAATGGGGATGAATTTGATAATGTATGTGATTTTCTAGATGGGAGGGAGTTGTGTGGTACTAATAGGGTGAAGGGCATGAGTCCAGAGTCTAATGGGGACAAGAAAGTCCAGAGCGAAGGACTTGTTGATTTGGATATGCTGGACCATGGGACAGATGAGCATATTATCAGAAACTTGTGCAGCCTTAATACTGAGAGGGATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAAAGCAACATGCCTAGATTGTCGGATGGAAGCAAGAGCTGTGATAACGATGATGATGACGATAGTGATGATGTATTGATATTGGATCCATCTGGGGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCCACAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAGATCTGGAAGCAGGCTTTGCTGTTTCGAGAAGCTGTCTTTTTGAAGAAAGATTTTGAGACAATCAGTGAACAGCTTAGTTGGCAGGGACAGAAAATGCATCCTTCCATGTATGATGATCGTGTTGGGGCAATATACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTTGGAAAAGCTACATCTGAAGGAGTCTCCTCAGCTTCATCTGGAGGAACACATGGATATTTGGAGAGAACCCCAAGTTCTCGTGCTGAAGATTGTGCTGAGAAACAGTTGCCTGACTCCTGTACTGCACGCTCAAGTCTTGATATATGTGCCAGAGTGCCCATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGACATAACTTATGAGGTTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTAAAAACTGTAAATTCCAAGCATCATCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAGATTCATGTAGCTGCCGAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCATTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAATTGGGGGTTCATGGACAGAGAAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGAGAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATGCACACCATTGAGGAAAGTTTTTGGACATCATCCACCAAAAGCACGCAGCTTCACCTTGTTATCGCCAAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA 1956 0.4264 MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSVELAYSKHLSSLEACLKNVADGKLPECGLVDDRVKFHKHLMEAQAESLLDDSGEKEVGDGLERRACCCPDGRKLGGSNRVKGVKPESNVAELERVYEYLDGTKSCVSDSVKGKKSDYNGDEFDNVCDFLDGRELCGTNRVKGMSPESNGDKKVQSEGLVDLDMLDHGTDEHIIRNLCSLNTERDILEEFDGGKILTVDASDAESNMPRLSDGSKSCDNDDDDDSDDVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDPTVGSIPEKSKWKSYSSQEIWKQALLFREAVFLKKDFETISEQLSWQGQKMHPSMYDDRVGAIYNLRQRLKCDKRVLFGKATSEGVSSASSGGTHGYLERTPSSRAEDCAEKQLPDSCTARSSLDICARVPIPLGPNHQAEVPEWTDITYEVDSKWLGTQIWPLKTVNSKHHLFERDPIGEGRQDSCSCRVQGSVECVRFHIAKKRAKVKLELGEAFHQWNLHKVGEEIGGSWTEKEEKKFKDVVKSNPASLEKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESECTPLRKVFGHHPPKARSFTLLSPKKATFKRENNK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02358 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Gma09g02358 651 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Gma09g02358 651 MobiDBLite consensus disorder prediction 251 273 - -
Gma09g02358 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 646 - -
Gma09g02358 651 Gene3D - 1 71 IPR036431 GO:0003677
Gma09g02358 651 SMART ELM2_2 445 497 IPR000949 -
Gma09g02358 651 CDD SANT 545 593 IPR001005 -
Gma09g02358 651 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Gma09g02358 651 CDD ARID 4 61 - -
Gma09g02358 651 SMART ARID_2 1 61 - -
Gma09g02358 651 MobiDBLite consensus disorder prediction 604 624 - -
Gma09g02358 651 MobiDBLite consensus disorder prediction 604 634 - -
Gma09g02358 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 646 - -
Gma09g02358 651 SMART bright_3 1 66 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02358 Gma-Chr9 48954536 48960048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02358 5 78 ARID Transcription Factor Family AT1G20910 36.364 1.04e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma09g02358 ARID 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02358 - - gmx:100780550 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02358 09 48954536 48960048 Gma09g02358 09 48954536 48960048 ECH
Gma18g02165 18 55371622 55377062 Gma09g02358 09 48954536 48960048 GST
Gma09g02358 09 48954536 48960048 Gma07g00634 07 6510417 6513749 PCT
Gma09g02358 09 48954536 48960048 Gma16g00316 16 3321245 3324301 PCT
Gma07g00634 07 6510417 6513749 Gma09g02358 09 48954536 48960048 PCT
Gma16g00316 16 3321245 3324301 Gma09g02358 09 48954536 48960048 PCT