Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02353 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGA 555 0.4018 MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTFQSPPVPLPYDMVLGGSASTYSESGRETVSSFETLITREDVEESDCKAQANSALTSPRKAQLPKSNVTQVLVTEEEDVCPICLEEYDVENPSNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02353 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Gma09g02353 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
Gma09g02353 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
Gma09g02353 184 SUPERFAMILY RING/U-box 131 182 - -
Gma09g02353 184 SMART ring_2 138 178 IPR001841 -
Gma09g02353 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 183 IPR013083 -
Gma09g02353 184 Pfam Ring finger domain 137 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02353 Gma-Chr9 48915225 48917278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02353 1 184 C3H Transcription Factor Family AT4G00335 57.527 2.06e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02353 - - gmx:100803758 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02353 09 48915225 48917278 Gma09g02353 09 48915225 48917278 ECH
Gma18g02169 18 55413824 55416082 Gma09g02353 09 48915225 48917278 GST
Gma09g02353 09 48915225 48917278 Gma07g00632 07 6486928 6489832 PCT
Gma09g02353 09 48915225 48917278 Gma16g00314 16 3297209 3300214 PCT
Gma07g00632 07 6486928 6489832 Gma09g02353 09 48915225 48917278 PCT
Gma16g00314 16 3297209 3300214 Gma09g02353 09 48915225 48917278 PCT