Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02350 ATGGGTTTTCCCGTAGGGTACCCGGAGCTCCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCTTCCTCGCGTGGCTCCGCTCCCTCGTTTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACTGAACCTTCCCCCTCCGACCTCCCTCCGCCGGCTCCGCCGCGCGAGCCGACGCTATCCGCACTTCTCATCCGAGAGTTTCTCCCCGTGGCCGCCTTCCGCGACCTCGCCAGCGCCTCCGGAGTAGATCCTCCTCCGTCGGGATGCGCCGTGTGCCTGAGCGAGTTTTCCGAAGAAGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATTTTCCACTGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCGCTGTGCAGAAGTACGTTGGTGCCACATCAGAAGCTCGAAGAATACAACCAGCGACTATGGGCGGCTTCTGGAGTTTCGCAGTTTTATTACCAAGACGATTACACGGCTTCCCTCTGA 516 0.6008 MGFPVGYPELLVPKMFLHALSFLAWLRSLVFALFRLLRISDLLDTEPSPSDLPPPAPPREPTLSALLIREFLPVAAFRDLASASGVDPPPSGCAVCLSEFSEEEEIRCMANCKHIFHCACVDRWIDHDQKTCPLCRSTLVPHQKLEEYNQRLWAASGVSQFYYQDDYTASL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02350 171 Pfam Ring finger domain 93 136 IPR001841 -
Gma09g02350 171 SUPERFAMILY RING/U-box 86 145 - -
Gma09g02350 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Gma09g02350 171 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Gma09g02350 171 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 169 - -
Gma09g02350 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 141 IPR013083 -
Gma09g02350 171 SMART ring_2 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02350 Gma-Chr9 48892392 48893194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02350 1 157 C3H Transcription Factor Family AT1G63840 44.654 5.65e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02350 K16281 - gmx:100803226 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02350 09 48892392 48893194 Gma09g02350 09 48892392 48893194 ECH
Gma18g02172 18 55441377 55442224 Gma09g02350 09 48892392 48893194 GST
Gma09g02350 09 48892392 48893194 Gma07g00623 07 6391299 6391961 PCT
Gma09g02350 09 48892392 48893194 Gma16g00306 16 3224620 3225230 PCT
Gma07g00623 07 6391299 6391961 Gma09g02350 09 48892392 48893194 PCT
Gma16g00306 16 3224620 3225230 Gma09g02350 09 48892392 48893194 PCT