Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02345 ATGCTATCAAAGGAAAATCCTGAGAACAGGGTTTTGGTTGCTGATCATGGAGGAATACCACCACTAGTGCAACTCTTGTCATATCCAGATTCAAAAATACAAGAACATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAGTCTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTGTTGGAGAATGGGAGTTGTGTGGCTAAGGAGAACTCAGCAGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGaagcaagacaagagaTTGGACAACTTAGTTTCATCGAAACCCTTGTTGACTTCATGAGAGAAGGGAGTCCAAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGCTCAAGTAATTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATTGCAATCTTAGATCTCATTAGCAGGAGCGAGCAAATTTAA 543 0.3812 MLSKENPENRVLVADHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVEARQEIGQLSFIETLVDFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGVYEYLMEIKQNGTNRAQRKAIAILDLISRSEQI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02345 180 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 96 178 - -
Gma09g02345 180 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 1 95 - -
Gma09g02345 180 SUPERFAMILY ARM repeat 2 176 IPR016024 -
Gma09g02345 180 SMART arm_5 47 87 IPR000225 GO:0005515
Gma09g02345 180 SMART arm_5 94 134 IPR000225 GO:0005515
Gma09g02345 180 SMART arm_5 6 46 IPR000225 GO:0005515
Gma09g02345 180 Gene3D - 96 180 IPR011989 -
Gma09g02345 180 Gene3D - 1 95 IPR011989 -
Gma09g02345 180 Pfam Armadillo/beta-catenin-like repeat 6 45 IPR000225 GO:0005515
Gma09g02345 180 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 17 59 IPR000225 GO:0005515
Gma09g02345 180 PANTHER U BOX DOMAIN-CONTAINING 96 178 - -
Gma09g02345 180 PANTHER U BOX DOMAIN-CONTAINING 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02345 Gma-Chr9 48841850 48842620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02345 1 180 U-box Gene Family AT5G42340 50.781 5.78e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02345 - - gmx:100777362 202.986