Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma09g02298 | ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTCCCTCCAGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATACTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGTTACCTGATAGTTTTTTCTTTGAAAACTATCAGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATACGCGACAGGAATCACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTCCTCAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTTCTCGGCAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCTGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGACGGCGTATGTTAGGTTCTTCATCGGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAAACTCGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA | 1314 | 0.4475 | MEFDAAIPVSREHLPPDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLLPDSFFFENYQAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVAMNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTMGNGQSYGTSRQSEPANSGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDNIDEEG | 437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma09g02298 | 437 | SUPERFAMILY | CCCH zinc finger | 143 | 168 | IPR036855 | GO:0046872 | |
| Gma09g02298 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 94 | 122 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Gene3D | - | 34 | 91 | - | - | |
| Gma09g02298 | 437 | Gene3D | - | 289 | 372 | - | - | |
| Gma09g02298 | 437 | SUPERFAMILY | CCCH zinc finger | 300 | 326 | IPR036855 | GO:0046872 | |
| Gma09g02298 | 437 | SUPERFAMILY | CCCH zinc finger | 43 | 66 | IPR036855 | GO:0046872 | |
| Gma09g02298 | 437 | SUPERFAMILY | CCCH zinc finger | 346 | 370 | IPR036855 | GO:0046872 | |
| Gma09g02298 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 40 | 65 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 97 | 121 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 299 | 324 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 143 | 167 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 345 | 370 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 39 | 66 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SMART | c3hfinal6 | 94 | 121 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SMART | c3hfinal6 | 297 | 324 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SMART | c3hfinal6 | 38 | 65 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SMART | c3hfinal6 | 343 | 370 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | Gene3D | - | 93 | 178 | - | - | |
| Gma09g02298 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 343 | 371 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 11 | 436 | - | - | |
| Gma09g02298 | 437 | PANTHER | PROTEIN PHOSPHATASE RELATED | 11 | 436 | - | - | |
| Gma09g02298 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 297 | 325 | IPR000571 | GO:0046872 | |
| Gma09g02298 | 437 | SUPERFAMILY | CCCH zinc finger | 98 | 123 | IPR036855 | GO:0046872 | |
| Gma09g02298 | 437 | MobiDBLite | consensus disorder prediction | 402 | 437 | - | - | |
| Gma09g02298 | 437 | MobiDBLite | consensus disorder prediction | 239 | 274 | - | - | |
| Gma09g02298 | 437 | MobiDBLite | consensus disorder prediction | 402 | 427 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma09g02298 | Gma-Chr9 | 48451957 | 48459636 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma09g02298 | 19 | 434 | C2H2 Transcription Factor Family | AT3G02830 | 61.190 | 1.16e-174 | 492 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Gma09g02298 | zf-CCCH | 5.3e-09 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma09g02298 | - | - | gmx:100786261 | 896.345 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma18g02226 | 18 | 56028532 | 56035098 | Gma09g02298 | 09 | 48451957 | 48459636 | GST |