Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02289 ATGCCGGTTGACAACATGGGAGATAATGTTACTGTCTCGACCACTCAACACCACATTGCAATCCCCATTGAGAAATTGAATGCATCACTTGAAGCTGCAAAGGAAGAAAATTCTGTAACCGATGATGCCTATGTGGACAATGATGTCCAAAAATCTCAAGAGAAAGATGAAGAAACTGAAGAGAAGGGAGAATGTCGCTACTGTCAGGAAGAGGACTTAGTTTCTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTCAAGTATGTTCACAGGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTGTGTGAGATTTGCAGGAAGCCTTACAATCCAAATGATTACCCGCCACTTCCAGAACTTCATTCTGATAATGATGACACCGAGATAATTATATTAAGAGAGGAATGGACAATTCCTGGAACCAACACTCAAATTCGATCACCTCTGGTGCTGGCAGATCGTGCTACCAAGGGCCTCATTGATTCGATGAACAAAGACTTCAGCTTGAGAAACCCCACTGGTGGTGTGATATTTGGCATGTCACTCGTCATCTTTATCGCGGTGCTACTTATAAAGGATGCCTATGAATTTGCGCCACCCAAGGAGGAGAAATTTGCTCATTTTTTGTACAGTGCTGTGATGACTATCTCTGTGCCAGTTTACATTTTATCGTGGGTTTTACAATGCCAAGCCTATAGAAAAAGCGAGAGAGAGAGGGAAAGAGAAAGACAAAGAGATCGCAATGCATAG 768 0.4245 MPVDNMGDNVTVSTTQHHIAIPIEKLNASLEAAKEENSVTDDAYVDNDVQKSQEKDEETEEKGECRYCQEEDLVSNMESPCNCNGSVKYVHRRCIDQWYNSKGRMILCEICRKPYNPNDYPPLPELHSDNDDTEIIILREEWTIPGTNTQIRSPLVLADRATKGLIDSMNKDFSLRNPTGGVIFGMSLVIFIAVLLIKDAYEFAPPKEEKFAHFLYSAVMTISVPVYILSWVLQCQAYRKSERERERERQRDRNA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02289 255 ProSiteProfiles Zinc finger RING-CH-type profile. 57 118 IPR011016 GO:0008270
Gma09g02289 255 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 242 - -
Gma09g02289 255 Pfam RING-variant domain 65 111 IPR011016 GO:0008270
Gma09g02289 255 Coils Coil 23 43 - -
Gma09g02289 255 SMART ringv_2 64 112 IPR011016 GO:0008270
Gma09g02289 255 SUPERFAMILY RING/U-box 61 116 - -
Gma09g02289 255 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 242 IPR033275 -
Gma09g02289 255 CDD RING_CH-C4HC3_MARCH 65 112 - -
Gma09g02289 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02289 Gma-Chr9 48379143 48381398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02289 54 115 C3H Transcription Factor Family AT2G22120 40.299 4.37e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02289 - - gmx:102670090 480.33