Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02260 ATGGAGGATTCAAGGATGGACTTGCTTTCTCAATGGGAAATGGGTGATGATGATTTCTTCAATAATCAAATCCACATGATCTCTTTCACCGAAGAAAAGTCCTCCAAAGACATGATTTTTCAACAAGAAGTTTTCTCCTCATCTTCTTCCTCTTCTTCCCTTCAAAGCAACTTGAAACCTTGCTCACCATTTCCAACGGGTGGTTACGTTTTGTCTTTTGATAAACCTGTTGTTGAACCACTTTACCCTAAAAAACATCACTCTCCTAAAAGCCTAGCACAAAGCCAATATTGTGTTGAACCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCTGAGAGAAAAAGGAGAGAGGAATTGACTAAGAGCATCGTAGCACTTTCAGCCACCATTCCTGGGTTAAAGAAGACAGACAAGGTCAATGTAGTGCGTGAAGCTGTCAGTTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAAATCAAAAGAGAAAGGAAAGTATGAATTCAATAATACTCAACAAGCACAGGCCACTCTCCATAAATGATCAAGCCACTCATGGATTTGTGGATGTGAATGAAGAACTCCTCGAGGTGAAAGTCACTGTTTTAGACAAGGAAGTGCTCATTGGAATTTATTGTGAGAAACAGAGGCAGAGATTGCTCAAAATATTGTCATTGCTTGATAATCTCCATCTTTCTATCACCCATACCAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATCATCGCTCAGATGAATAACGAATATAACATGACAATTGATGATCTAGTAAAAACACTGCGGCAACGCATATTGAAGTCACAGGATATGCAAAAATGA 864 0.3958 MEDSRMDLLSQWEMGDDDFFNNQIHMISFTEEKSSKDMIFQQEVFSSSSSSSSLQSNLKPCSPFPTGGYVLSFDKPVVEPLYPKKHHSPKSLAQSQYCVEPKAFPRTRPRVHILAERKRREELTKSIVALSATIPGLKKTDKVNVVREAVSYVKQLQERVKELENQKRKESMNSIILNKHRPLSINDQATHGFVDVNEELLEVKVTVLDKEVLIGIYCEKQRQRLLKILSLLDNLHLSITHTSVLPFGTSTLKITIIAQMNNEYNMTIDDLVKTLRQRILKSQDMQK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02260 287 Gene3D - 102 173 IPR036638 GO:0046983
Gma09g02260 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983
Gma09g02260 287 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 286 - -
Gma09g02260 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 172 IPR036638 GO:0046983
Gma09g02260 287 Coils Coil 146 173 - -
Gma09g02260 287 PANTHER BHLH TRANSCRIPTION FACTOR 1 286 - -
Gma09g02260 287 Pfam Helix-loop-helix DNA-binding domain 111 157 IPR011598 GO:0046983
Gma09g02260 287 SMART finulus 113 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02260 Gma-Chr9 48123503 48127752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02260 112 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.674 1.14e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g02260 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02260 - - gmx:100808355 528.094