LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g02247	ATGATCGTCTGCGTCGCCGTCGTCGGTCACCAGAACAATCCGCTGTACATTCAGAGCTTCACGGAGGCCGACGATGCTCTTAAGCTCCACCACATCGTCCATTGCTCGCTCGATGTGGTCGACGAGCGAGTGAACAATCCTAAAAAGTCTGGACCGATGCTTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTATATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATTTTTTCAGGAGGTTCCATTCTGCATATGTAGATGCCGTTTCAAACCCATTCCATGTACCAGGCAAAAAGATAACCTCCAGAACTTTTGCAGAAAGAGTGAGCACAATTGTCAAGTCATTTGGCTTGAGTTCTGCTGGATCAAACGCACACAGTTACGCTCTTCAAATCAATCTCTTCTCAGAAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCGGAAACTGA	1944	0.4403	MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLGLLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHSAYVDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAGSNAHSYALQINLFSEMGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma09g02247	647	CDD	ATP-synt_V_A-type_beta_C	546	640	-	-
	Gma09g02247	647	CDD	V_A-ATPase_B	250	538	-	-
	Gma09g02247	647	CDD	TRAPPC2L	3	134	IPR044760	GO:0006888
	Gma09g02247	647	Pfam	Sedlin, N-terminal conserved region	7	135	IPR006722	GO:0006888
	Gma09g02247	647	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B1-RELATED	161	647	-	-
	Gma09g02247	647	Hamap	V-type ATP synthase beta chain [atpB].	176	645	IPR022879	-
	Gma09g02247	647	Pfam	ATP synthase alpha/beta family, beta-barrel domain	182	248	IPR004100	GO:0046034\|GO:1902600
	Gma09g02247	647	ProSitePatterns	ATP synthase alpha and beta subunits signature.	527	536	IPR020003	GO:0005524
	Gma09g02247	647	SUPERFAMILY	SNARE-like	2	137	IPR011012	-
	Gma09g02247	647	Gene3D	-	1	142	-	-
	Gma09g02247	647	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	305	536	IPR000194	GO:0005524
	Gma09g02247	647	TIGRFAM	V-ATPase_V1_B: V-type ATPase, B subunit	178	645	IPR005723	GO:0033180\|GO:0046961\|GO:1902600
	Gma09g02247	647	Gene3D	-	187	646	-	-
	Gma09g02247	647	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B	161	647	IPR022879	-
	Gma09g02247	647	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	252	542	IPR027417	-
	Gma09g02247	647	CDD	ATP-synt_V_A-type_beta_N	178	249	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g02247	Gma-Chr9	48041663	48052275	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma09g02247	157	647	Primary Pumps ATPases(2)	AT4G38510	95.927	0.0	959

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma09g02247	K02147		-	gmx:100814088	966.066