Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02244 ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCGAAGAGGGCATCGAGGGGATCCTCAAAGGCTGCTCCTGAGAATCAACCTGAGCCTGAAACTGCGGAAGTGGTCGTGAAAAATAATGAAGAAAATCCTGTTGTTGATGCTGTGGTGGAAGAAAAGCCCGTTGATGTGGAGCAAGAACATGAGGAAGTGCCAAATGGGTCGGctaaggtggaaaACAATGAAGAGGAGATTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTATCCTGAGTATGAAGCAGAGGAATATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTCGAGGAAGATCCCGAAGAGATTGTAGGTGAAGAAGAGGGTGATACAGGtgatgaagaagttgaatatgtttatgaagaagttgaggatgatgatgaTGAGCATGCTGGTGAGGAGCATGAGCATGCACAGATGCCTGATGTGGAGCAAGAGGAACACCGTGAAGTGGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTTGGTGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAAAAGGTTTTCGGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACAAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACGGTTGAGCAAGCGAGAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGCAAACGATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAACTTAAACATTATGGAGTAGAAGATGTGGAGGATTTGACTTTAATAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCTTCTCGTTCAGATGCTAAGGAAGCCTATAAGCGACTGCAGAAGAGAGATGTTGCATTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCCGACTCTTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCGCTGCCTCCTTCATGGAATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGAGAGATTGAAAAAGTTGAGCTTGCTAAGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGTTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGAAAATATGTTAATCATGGGGACTTCCGCTCTGGCCGCAATTCTGGAAGATTGGTAAGGTCTTCACGGAGTCAACCTGCACCACGTAGTCTTCCTGCCCATGTGGTGAGAGGAGTTGGAAGTCGTGTTCCGCCAGTTAGACCTATTAGTGTGAGAAATAGACGTCCTGTCACACCCATGCTAGTAAGAGCCAGGCCAGTGGCTCCTCCAGCTAGAAGCtatgacaggagattggctgCTCCTGCTTATCCCAAAAGTGGCATGAAAAGAGATTATAGTCGACGTGTGGATCTACCACCTCCAAGAAGTAGAGTTGCTACAGATTATGGCTCTAGAGTAGCCTCTCAGAGGCATTCATCTTACAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTGCATAGAAGAAGTACATCTCGTGGTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGGCTCCTCCTTCTCCTCCTCCCCCCCATCTAAGTTACCATGAAGGACGGCCACGTGATTATGATTCTCTATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCTCGGTATGATACTGGTGCTCGCCAGTCAAGGTCTCGTTTAGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGATACAGTGGCAGCAGAAATTCTATTTCTAATCAAGATTTACATGGGACTTATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGTGATTATGCATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCTATGTATTCTGGTAGAGGTGTGGGTGGTAGCAGCAATTATATGGGTAGTGGTGGATCTGGGTCTTATTATTGA 2337 0.433 MPPRIVKRGAAAKRASRGSSKAAPENQPEPETAEVVVKNNEENPVVDAVVEEKPVDVEQEHEEVPNGSAKVENNEEEIKESIDEYEKDEHLDFEDNYPEYEAEEYGGVDYDEKEIEQDEGQEEGDEVEEDPEEIVGEEEGDTGDEEVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKYVNHGDFRSGRNSGRLVRSSRSQPAPRSLPAHVVRGVGSRVPPVRPISVRNRRPVTPMLVRARPVAPPARSYDRRLAAPAYPKSGMKRDYSRRVDLPPPRSRVATDYGSRVASQRHSSYRDYPARGSDYPELHRRSTSRGAPKRGYVDDGYGQRFERAPPSPPPPHLSYHEGRPRDYDSLSGSKRPYTAIDDVPPRYDTGARQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYASRGSDVGGRSYSSMYSGRGVGGSSNYMGSGGSGSYY 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02244 778 MobiDBLite consensus disorder prediction 95 162 - -
Gma09g02244 778 SUPERFAMILY RNA-binding domain, RBD 271 428 IPR035979 GO:0003676
Gma09g02244 778 MobiDBLite consensus disorder prediction 523 675 - -
Gma09g02244 778 PANTHER RNA RECOGNITION MOTIF 1 778 - -
Gma09g02244 778 SUPERFAMILY RNA-binding domain, RBD 187 270 IPR035979 GO:0003676
Gma09g02244 778 MobiDBLite consensus disorder prediction 163 181 - -
Gma09g02244 778 CDD RRM_SF 194 265 - -
Gma09g02244 778 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 778 - -
Gma09g02244 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 451 IPR000504 GO:0003723
Gma09g02244 778 SMART rrm1_1 193 266 IPR000504 GO:0003723
Gma09g02244 778 SMART rrm1_1 370 445 IPR000504 GO:0003723
Gma09g02244 778 SMART rrm1_1 273 352 IPR000504 GO:0003723
Gma09g02244 778 MobiDBLite consensus disorder prediction 45 77 - -
Gma09g02244 778 MobiDBLite consensus disorder prediction 588 604 - -
Gma09g02244 778 MobiDBLite consensus disorder prediction 738 778 - -
Gma09g02244 778 Gene3D - 360 483 IPR012677 -
Gma09g02244 778 Coils Coil 68 91 - -
Gma09g02244 778 MobiDBLite consensus disorder prediction 454 491 - -
Gma09g02244 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 356 IPR000504 GO:0003723
Gma09g02244 778 Gene3D - 272 355 IPR012677 -
Gma09g02244 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 428 IPR000504 GO:0003723
Gma09g02244 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 340 IPR000504 GO:0003723
Gma09g02244 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Gma09g02244 778 CDD RRM_SF 371 426 - -
Gma09g02244 778 MobiDBLite consensus disorder prediction 1 181 - -
Gma09g02244 778 MobiDBLite consensus disorder prediction 748 778 - -
Gma09g02244 778 Gene3D - 137 267 IPR012677 -
Gma09g02244 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02244 Gma-Chr9 48003257 48008584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02244 194 468 Eukaryotic Initiation Factors Gene Family AT1G49760 20.861 7.21e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02244 - - gmx:100811387 1271.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02244 09 48003257 48008584 Gma09g02244 09 48003257 48008584 ECH
Gma18g02288 18 56586632 56591076 Gma09g02244 09 48003257 48008584 GST
Gma03g01015 03 34163499 34169886 Gma09g02244 09 48003257 48008584 PCT