Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02221 ATGGCTTCCGCCACCGTGGATTCCGACTTTGAATTCTTGGAATCTGTTCAACAATACCTACTTGGACACGATTCCGTCAATCTCATGCCTGAAACCCAACAAACTGCATCTCATGATCCATTTTCAGACCCTAAATGTGATGGTGATTTGGAGAACATCATTGTTTTCCGAAGTGAGGATGCAACGGCTGTGGTGGCGCGTGATGTCCACGCGCCACCAACATGGAAGCATTACAGAGGGGTGAGACGTAGACCATGGGGAAAGTTTGCGGCCGAGATTAGGGATCCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGGACTTATGATACTGAAGAGAAAGCAGCTTTGGCATATGATAAAGCCGCTTTCAAAATGCGTGGGCGAAAAGCTAAGCTGAATTTTCCTCACCTTATTGATTCCGATATGTTGTCGGAGGAGGTGATGGTGACAACTTCCAAGAGAAGTTTAGCGGAAAATTCTCCACCCTCATCACCGTCGTGGTCGTGTTCAGATGATAGCTTAGAATCACAAGGGGCAAAGAGGAGGAAGAGCCTGGCTGATCTACTGAATAAATTAGCCAAGAATAGAAGCCATGTCAAGGTGGAACGTTGA 612 0.4673 MASATVDSDFEFLESVQQYLLGHDSVNLMPETQQTASHDPFSDPKCDGDLENIIVFRSEDATAVVARDVHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGRKAKLNFPHLIDSDMLSEEVMVTTSKRSLAENSPPSSPSWSCSDDSLESQGAKRRKSLADLLNKLAKNRSHVKVER 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02221 203 PANTHER DNA-BINDING DOMAIN 1 198 IPR044808 GO:0003700|GO:0009873
Gma09g02221 203 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gma09g02221 203 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Gma09g02221 203 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Gma09g02221 203 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Gma09g02221 203 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Gma09g02221 203 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Gma09g02221 203 MobiDBLite consensus disorder prediction 153 180 - -
Gma09g02221 203 MobiDBLite consensus disorder prediction 153 174 - -
Gma09g02221 203 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Gma09g02221 203 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 198 - -
Gma09g02221 203 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02221 Gma-Chr9 47734946 47735807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02221 63 155 AP2-EREBP Transcription Factor Family AT2G44840 67.021 1.30e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma09g02221 AP2 4.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02221 K09286 - gmx:100806588 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02221 09 47734946 47735807 Gma09g02221 09 47734946 47735807 ECH
Gma18g02314 18 56977810 56978758 Gma09g02221 09 47734946 47735807 GST
Gma03g01049 03 35125188 35125781 Gma09g02221 09 47734946 47735807 PCT