Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02214 ATGGGTGAGAAAGATGATGATTTTGGGTTGAGTTTGAGTTTGAGTTTGGGGAGAGTGAACCAACAACAACAACACCCTCCTCCTTTGAATCACATGCACCAGCCTCAACAACTACAACCTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTCTCAGTTACCAGACCGGAGCTCCGAAATGATACGAGGAATCGACGTCAATTCGGCGGCGGAGTGCGACGGCGTTTCCTCGCCGAACAGCGCTGTCTCGAGCGTGAGCGGCGGCGACGGCAAGCAGAGCGAGAGGGACGACGATAATAATGCTGCCGCCGTGGCCGGTGAGAGGACCTCGTGCTCGCGAGGGAGCGACGATGACGACGGTGGTGGCAGCGATGCCTCGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAGCACGCTGAATCCGAAACGGAAGCAAGCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGATGCTATGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTCCAAGAGCTTAGGGCATTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATATGCCCTTCTTGTGAGCGTACTCACTCCTTTGCATCCTCCTCCACTGCCACCATCCACTCGGCGGTGGCGGCCACATCGAGCAATCGCAAACTGTTCGGCACAAACATCCGGCTGCCCGTGTCCTTCAACACTCGGCCATTTGAAGGCCCAATTCCTCGGCCATAA 876 0.5171 MGEKDDDFGLSLSLSLGRVNQQQQHPPPLNHMHQPQQLQPVPMNHNKTLFGDLSQLPDRSSEMIRGIDVNSAAECDGVSSPNSAVSSVSGGDGKQSERDDDNNAAAVAGERTSCSRGSDDDDGGGSDASRKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTICPSCERTHSFASSSTATIHSAVAATSSNRKLFGTNIRLPVSFNTRPFEGPIPRP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02214 291 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Gma09g02214 291 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Gma09g02214 291 Gene3D - 123 191 - -
Gma09g02214 291 SUPERFAMILY Homeodomain-like 117 187 IPR009057 -
Gma09g02214 291 CDD homeodomain 130 187 IPR001356 GO:0003677
Gma09g02214 291 MobiDBLite consensus disorder prediction 73 137 - -
Gma09g02214 291 PANTHER - 4 274 - -
Gma09g02214 291 Coils Coil 199 219 - -
Gma09g02214 291 MobiDBLite consensus disorder prediction 14 54 - -
Gma09g02214 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 274 - -
Gma09g02214 291 SMART HOX_1 128 190 IPR001356 GO:0003677
Gma09g02214 291 MobiDBLite consensus disorder prediction 114 137 - -
Gma09g02214 291 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Gma09g02214 291 Pfam HD-ZIP protein N terminus 1 98 IPR006712 GO:0005634
Gma09g02214 291 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Gma09g02214 291 MobiDBLite consensus disorder prediction 1 54 - -
Gma09g02214 291 MobiDBLite consensus disorder prediction 75 92 - -
Gma09g02214 291 Pfam Homeodomain 130 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02214 Gma-Chr9 47670481 47673994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02214 29 243 Homeobox Transcription Factor Family AT3G60390 59.438 2.37e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma09g02214 HD-ZIP_N 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02214 K09338 - gmx:100804456 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02214 09 47670481 47673994 Gma09g02214 09 47670481 47673994 ECH
Gma18g02327 18 57087634 57091355 Gma09g02214 09 47670481 47673994 GST
Gma03g01077 03 35497912 35500847 Gma09g02214 09 47670481 47673994 PCT
Gma07g01022 07 11985920 11989531 Gma09g02214 09 47670481 47673994 PCT