Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02208 ATGGGGTTTAGGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGAAAGTCAAAGGTAAGTTTGCAAAAGGATGGTGCTGAGAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGTAGCTGTATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATCTGAGAAAAGCAAGAAGGAAACAAATGCTCCTCCAGGGTCCTCTACATCAACCAGTAATGCAGAAAGTGTCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAATTGGCCACTAGGAATTTCAGGCCGGAGAGTCTTCTTGGCGAGGGAGGGTTTGGTTGTGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGGCTTACTGTTGCAGTCAAGACCCTCAACCATGATGGACTGCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTTGTCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATTAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTACTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCCAAACTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAATATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGACGATCTATCGATAAAAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCAAGACCTGTACTAGGAGACCGGAGGATGTTACTACGAATAATTGACCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGTCACAGAAGGCTGCGCAGCTTGCTGCTCAATGCCTTAGCCGTGATCCGAAATCCAGACCTATGATGAGCGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCATCTTATCACTTCCAGGTTGCGCGAGTAGATCGTACCATGTCCATGCCTAAAAATGGTATGCAAGCACAGTTAGCATCTTTATCGAGGAAGGGTCAACCAGTGAGGATCTTGTCAAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCACTATATCAAGTCACCAAAACCTAATGGATAA 1425 0.4351 MGFRNNAIQAGSLDVGKSKVSLQKDGAEKEIGCCVKFCFIGSCIPSRSKVDNSISGTSANSVEKTSASEKSKKETNAPPGSSTSTSNAESVPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLTFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGSQKAAQLAAQCLSRDPKSRPMMSEVVQALKPLQNLKDMAISSYHFQVARVDRTMSMPKNGMQAQLASLSRKGQPVRILSSPKGPHGSPYHHYIKSPKPNG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02208 474 MobiDBLite consensus disorder prediction 50 65 - -
Gma09g02208 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Gma09g02208 474 PANTHER RECEPTOR-LIKE KINASE PLANT 57 466 - -
Gma09g02208 474 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Gma09g02208 474 PANTHER OS01G0588500 PROTEIN-RELATED 57 466 - -
Gma09g02208 474 Gene3D Transferase(Phosphotransferase) domain 1 208 426 - -
Gma09g02208 474 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g02208 474 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Gma09g02208 474 Gene3D Phosphorylase Kinase; domain 1 89 207 - -
Gma09g02208 474 MobiDBLite consensus disorder prediction 50 97 - -
Gma09g02208 474 CDD STKc_IRAK 128 406 - -
Gma09g02208 474 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g02208 474 MobiDBLite consensus disorder prediction 437 474 - -
Gma09g02208 474 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02208 Gma-Chr9 47574458 47578243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02208 80 419 Glycoside Hydrolase AT3G07070 51.705 8.38e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma09g02208 Pkinase 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02208 - - gmx:100802866 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02335 18 57462043 57468590 Gma09g02208 09 47574458 47578243 GST
Gma19g00174 19 2110379 2115277 Gma09g02208 09 47574458 47578243 PCT
Gma09g02208 09 47574458 47578243 Gma19g00174 19 2110379 2115277 PCT