Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02195 ATGGCCTTCCCACCTCCTCACGGTTTCACGTTTAACACTACTCATGAAGAAGATCACCACCACCTCCCTCCAACCTCTCTCAACCCCTTCCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCATCTTTCATGTTGAAGCGGTCCATGTCGTTTTCCGGCATTGAGAACAAGTGCGATGAAGTACTACATGGAGACGATGAGTTATCCGATGATGGGATCTTCCAGTGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGATCTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTTCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCATTTGGAGAAGGAATATGAAGTCCTCAAGAAACAGTTTGAAGCAGTCAAGGCCGATAATGATGTTCTTAAGGTTGAGAACCAGAAACTACAGGCAGAGTTACAAGCTGTAAAAAGTAGGGATTGGTGTGAAGCTGGAATGATGAGCCATAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGTTTAGAGATTAATCTAGATCACTCAAGAACACTAGGTTTGAATAGTCCCATATCTTCTCAGAACGGTAAAAACCTACTACTACCCAATTCGTTAAACCCCACCAGCATAACACAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACAACAGAACTTTTGGCCCTGGCCTGATCAGCAGCACCAGCGTTTCCATTGA 813 0.4502 MAFPPPHGFTFNTTHEEDHHHLPPTSLNPFPSLPPQHFQGGASFMLKRSMSFSGIENKCDEVLHGDDELSDDGIFQCGEKKKRLNLEQVKALEKSFDLGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDVLKVENQKLQAELQAVKSRDWCEAGMMSHKKETEGSWSNGSDNSLEINLDHSRTLGLNSPISSQNGKNLLLPNSLNPTSITQLLQDDGLCNMFHNIDAQQNFWPWPDQQHQRFH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02195 270 SMART HOX_1 78 139 IPR001356 GO:0003677
Gma09g02195 270 CDD homeodomain 80 136 IPR001356 GO:0003677
Gma09g02195 270 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Gma09g02195 270 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Gma09g02195 270 Coils Coil 127 175 - -
Gma09g02195 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 270 IPR045224 GO:0003700
Gma09g02195 270 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Gma09g02195 270 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 270 - -
Gma09g02195 270 Gene3D - 76 150 - -
Gma09g02195 270 SUPERFAMILY Homeodomain-like 77 136 IPR009057 -
Gma09g02195 270 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Gma09g02195 270 MobiDBLite consensus disorder prediction 1 32 - -
Gma09g02195 270 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Gma09g02195 270 Pfam Homeobox associated leucine zipper 135 174 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02195 Gma-Chr9 47463056 47465180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02195 1 263 Homeobox Transcription Factor Family AT5G15150 48.495 1.56e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma09g02195 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02195 K09338 - gmx:100797920 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02361 18 57688572 57691294 Gma09g02195 09 47463056 47465180 GST
Gma13g00471 13 17091196 17094065 Gma09g02195 09 47463056 47465180 PCT
Gma19g00186 19 2259995 2263829 Gma09g02195 09 47463056 47465180 PCT
Gma09g02195 09 47463056 47465180 Gma13g00471 13 17091196 17094065 PCT
Gma09g02195 09 47463056 47465180 Gma19g00186 19 2259995 2263829 PCT