Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02189 ATGAGGAGAGTTATTCTGCGAAGAGATGGAAGTAGAAGGTGCTCCAACAACTCGCCGGTGACGATTGTGAGGCAGGTGAAATATGGGAAGTGCTGCAGGAATCTTGCATGCAGAATTGGAGGACATGTTGTTGATGGTTGCACGGAGTTTGTGGCCAGTGGCGCTGAAGGTACCCGTGAAGCTATGACTTGTGCTACATGTGGCTGCCATAGGAATTTTCATATGAAGGAGGAGATAACTCAAGTCCTTTGTGCCTGCTCTTCTCACCCTACTACCCGTACCGTTGGAGATTGA 294 0.4898 MRRVILRRDGSRRCSNNSPVTIVRQVKYGKCCRNLACRIGGHVVDGCTEFVASGAEGTREAMTCATCGCHRNFHMKEEITQVLCACSSHPTTRTVGD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02189 97 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 27 77 IPR006456 -
Gma09g02189 97 Pfam ZF-HD protein dimerisation region 25 78 IPR006456 -
Gma09g02189 97 PANTHER MINI ZINC FINGER PROTEIN 2 19 87 - -
Gma09g02189 97 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 28 77 IPR006456 -
Gma09g02189 97 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02189 Gma-Chr9 47362499 47362792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02189 23 92 Zinc finger-homeobox gene family AT3G28917 57.746 2.61e-23 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma09g02189 ZF-HD_dimer 6.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02189 - - vvi:100268029 112.464