Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02188 ATGAGGAGGATGACTCTCATGGGAAGAAATGGCCCTCAAAGATGCCCAAACAATGCATTGGTGACAATTGTGAGATATGTGAGATATCGCGACTGCCGAAGGAATCACGTGTGTCATCTTGGAGGACATACTGTGGATGGCTGCACGGAGTTCATACCAAGCGGATCAGAAGGTACTGATACAGCTCTGATTTGTGCTGCATGTGGCTGCCACAGAAACTTTCACCGAAGGGAGGAATATTCTCAATTAGTTTGTGGATGCACTTCTCACCCTTCTACCAGTGGT 285 0.4737 MRRMTLMGRNGPQRCPNNALVTIVRYVRYRDCRRNHVCHLGGHTVDGCTEFIPSGSEGTDTALICAACGCHRNFHRREEYSQLVCGCTSHPSTSG 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02188 95 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Gma09g02188 95 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Gma09g02188 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Gma09g02188 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 82 - -
Gma09g02188 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 17 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02188 Gma-Chr9 47360178 47360462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02188 24 93 Zinc finger-homeobox gene family AT3G28917 60.563 3.27e-25 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma09g02188 ZF-HD_dimer 4.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02188 - - vra:106758454 114.775