Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma09g02187 | ATGGACATAACCCCAACAACAACGATCAACAACAACAACACTACTCCCAGTGCAACAACAAAATCCCCAGAAAATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTCATCTTTCTCGAATGGTGTCCTCAAACGCACCCACCACCACCACCACCTCCACCACCCTATCCCTCCGGTGGTTACCTACAAAGAATGCCTCAAAAATCACGCCGCCAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCTGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGAGCCCCCCATCGCCTCCACCACCACGCACGTCATCGAGTATCAGCCCCACCACCGCCACCACCCTCCCCCGCCGCTGCACGCGGCGGCGGTAGCCACCCGCAGCCCCAATTCTGCTTCCCCACCGCCGATCTCCTCGTCGTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGACTGGCGGCTCCGCCGGAGAGCACCGCCGCGCCTGCCGCCGCGCCCACGAGAAAGCGGTTCCGCACGAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTAGGGTGGAAGATTCAGAAGCGCGACGAGGATTTGATTCACGAAATTTGCAACGAAGTTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTTGCCAAAAAGGATAACAATAATATTGTTACTAGTAATGATATTAATATTACTACTAAAAATAATATTTCTACTGATAATGATGCAAATGGGAGTGATGTCAAGGTTTTTGAAAACCCTAACAATGATGGTGGTGAAGATCGCGCTGAAGATCCGAGTAGTAATCACTATGATGGGGTGAACGTTgttggtgctaatggatcttctagttcttga | 999 | 0.5285 | MDITPTTTINNNNTTPSATTKSPENETETPTRITTPITPTTTKTSSFSNGVLKRTHHHHHLHHPIPPVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQPHHRHHPPPPLHAAAVATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPAAAPTRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEICNEVGVDRSVLKVWMHNNKNTFAKKDNNNIVTSNDINITTKNNISTDNDANGSDVKVFENPNNDGGEDRAEDPSSNHYDGVNVVGANGSSSS | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma09g02187 | 332 | MobiDBLite | consensus disorder prediction | 283 | 332 | - | - | |
Gma09g02187 | 332 | MobiDBLite | consensus disorder prediction | 283 | 298 | - | - | |
Gma09g02187 | 332 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 1 | 297 | - | - | |
Gma09g02187 | 332 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Gma09g02187 | 332 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 71 | 122 | IPR006456 | - | |
Gma09g02187 | 332 | SUPERFAMILY | Homeodomain-like | 196 | 264 | IPR009057 | - | |
Gma09g02187 | 332 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 203 | 260 | IPR006455 | - | |
Gma09g02187 | 332 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 1 | 297 | - | - | |
Gma09g02187 | 332 | MobiDBLite | consensus disorder prediction | 139 | 168 | - | - | |
Gma09g02187 | 332 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 70 | 122 | IPR006456 | - | |
Gma09g02187 | 332 | Gene3D | - | 190 | 264 | - | - | |
Gma09g02187 | 332 | MobiDBLite | consensus disorder prediction | 301 | 315 | - | - | |
Gma09g02187 | 332 | Pfam | ZF-HD protein dimerisation region | 69 | 123 | IPR006456 | - | |
Gma09g02187 | 332 | CDD | homeodomain | 204 | 257 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma09g02187 | Gma-Chr9 | 47341864 | 47342862 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma09g02187 | 1 | 259 | ZF-HD Transcription Factor Family | AT5G15210 | 52.124 | 1.39e-76 | 234 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Gma09g02187 | ZF-HD_dimer | 2.1e-28 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma09g02187 | - | - | gmx:100789447 | 534.258 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma18g02369 | 18 | 57808294 | 57810009 | Gma09g02187 | 09 | 47341864 | 47342862 | GST | |
Gma13g00462 | 13 | 16859098 | 16860021 | Gma09g02187 | 09 | 47341864 | 47342862 | PCT | |
Gma19g00198 | 19 | 2531998 | 2533613 | Gma09g02187 | 09 | 47341864 | 47342862 | PCT | |
Gma09g02187 | 09 | 47341864 | 47342862 | Gma13g00462 | 13 | 16859098 | 16860021 | PCT | |
Gma09g02187 | 09 | 47341864 | 47342862 | Gma19g00198 | 19 | 2531998 | 2533613 | PCT |