Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02187 ATGGACATAACCCCAACAACAACGATCAACAACAACAACACTACTCCCAGTGCAACAACAAAATCCCCAGAAAATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTCATCTTTCTCGAATGGTGTCCTCAAACGCACCCACCACCACCACCACCTCCACCACCCTATCCCTCCGGTGGTTACCTACAAAGAATGCCTCAAAAATCACGCCGCCAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCTGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGAGCCCCCCATCGCCTCCACCACCACGCACGTCATCGAGTATCAGCCCCACCACCGCCACCACCCTCCCCCGCCGCTGCACGCGGCGGCGGTAGCCACCCGCAGCCCCAATTCTGCTTCCCCACCGCCGATCTCCTCGTCGTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGACTGGCGGCTCCGCCGGAGAGCACCGCCGCGCCTGCCGCCGCGCCCACGAGAAAGCGGTTCCGCACGAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTAGGGTGGAAGATTCAGAAGCGCGACGAGGATTTGATTCACGAAATTTGCAACGAAGTTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTTGCCAAAAAGGATAACAATAATATTGTTACTAGTAATGATATTAATATTACTACTAAAAATAATATTTCTACTGATAATGATGCAAATGGGAGTGATGTCAAGGTTTTTGAAAACCCTAACAATGATGGTGGTGAAGATCGCGCTGAAGATCCGAGTAGTAATCACTATGATGGGGTGAACGTTgttggtgctaatggatcttctagttcttga 999 0.5285 MDITPTTTINNNNTTPSATTKSPENETETPTRITTPITPTTTKTSSFSNGVLKRTHHHHHLHHPIPPVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQPHHRHHPPPPLHAAAVATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPAAAPTRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEICNEVGVDRSVLKVWMHNNKNTFAKKDNNNIVTSNDINITTKNNISTDNDANGSDVKVFENPNNDGGEDRAEDPSSNHYDGVNVVGANGSSSS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02187 332 MobiDBLite consensus disorder prediction 283 332 - -
Gma09g02187 332 MobiDBLite consensus disorder prediction 283 298 - -
Gma09g02187 332 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 297 - -
Gma09g02187 332 MobiDBLite consensus disorder prediction 1 48 - -
Gma09g02187 332 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Gma09g02187 332 SUPERFAMILY Homeodomain-like 196 264 IPR009057 -
Gma09g02187 332 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 203 260 IPR006455 -
Gma09g02187 332 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 297 - -
Gma09g02187 332 MobiDBLite consensus disorder prediction 139 168 - -
Gma09g02187 332 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Gma09g02187 332 Gene3D - 190 264 - -
Gma09g02187 332 MobiDBLite consensus disorder prediction 301 315 - -
Gma09g02187 332 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Gma09g02187 332 CDD homeodomain 204 257 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02187 Gma-Chr9 47341864 47342862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02187 1 259 ZF-HD Transcription Factor Family AT5G15210 52.124 1.39e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma09g02187 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02187 - - gmx:100789447 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02369 18 57808294 57810009 Gma09g02187 09 47341864 47342862 GST
Gma13g00462 13 16859098 16860021 Gma09g02187 09 47341864 47342862 PCT
Gma19g00198 19 2531998 2533613 Gma09g02187 09 47341864 47342862 PCT
Gma09g02187 09 47341864 47342862 Gma13g00462 13 16859098 16860021 PCT
Gma09g02187 09 47341864 47342862 Gma19g00198 19 2531998 2533613 PCT