Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02165 ATGGGAAGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAGGGACCGTGGACGCCAGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAAAGTTGCAGGTTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGCATGCAAGAGGAGCAAACCATCATTCAACTCCATGCACTATTAGGGAACAGGTGGTCTTCAATAGCTACACATTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACTCATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCTGTGACCCACAAGCCCAAGAACGATGCCCTTCTCTCCACCGAGGGCCCTTCCAAGATTGCTGCCAACATCAGCCACATGGCTCAGTGGGAGAGTGCCAGGCTCGAAGCAGAAGCAAGATTGGCCAGAGAATCAAAACTACGTAGTTCTTCACACtcatcatcatcatcattacaccacaccctaattggcacttctgcatcatcatcatcatcaCTTTCTCTTGATCATGCTTGGAAAAATGGTGGTAGTACTATTACTATAACTGTTAATGCAACTAGGGTTAGTGACCTTGAGTCCCCCACGTCTACCTTATCTGAGAACAATGTGCCACCAATTAATAATATTACTAGTACTGTGATTGAGTTTGTGGGTTCTTCAGAGAGAAGGACGGTGAAGGAAGAGGGAGATCAAGAGTGGAACAAATTAGGTTATCATGAAAGCTCCACCCATTTGGGAGAGTACAAAGATGGCATGGAGAACTCAATGCCTTTCACGTCTAGTCTACATGAGTTGACAATGACCATGGCAACCACGTGGGGTTCTAGTACTAGTAGTGCACATGAACACGCACATGTTGCTGAGGAGGGTTGTTTCACCAATCTTTTGCTGAATACTAACTCTGGCGGCCACCTGAGTTTGTCACCCGAGGACGGTGGAGAGTCTAATTATTGTCACAATAATGCTGGTAGTAGTGACGCTGGTAGTGGTAACAACGGTGACTTGTACCAAGAGAACAAGAATTATTGGAATAACATTCTTAATTTGATGAATTATTCTTCCCCTTCGGATTCACCAATGTTCTGA 1173 0.4254 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALLSTEGPSKIAANISHMAQWESARLEAEARLARESKLRSSSHSSSSSLHHTLIGTSASSSSSLSLDHAWKNGGSTITITVNATRVSDLESPTSTLSENNVPPINNITSTVIEFVGSSERRTVKEEGDQEWNKLGYHESSTHLGEYKDGMENSMPFTSSLHELTMTMATTWGSSTSSAHEHAHVAEEGCFTNLLLNTNSGGHLSLSPEDGGESNYCHNNAGSSDAGSGNNGDLYQENKNYWNNILNLMNYSSPSDSPMF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02165 390 CDD SANT 69 112 IPR001005 -
Gma09g02165 390 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma09g02165 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma09g02165 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma09g02165 390 MobiDBLite consensus disorder prediction 332 362 - -
Gma09g02165 390 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma09g02165 390 CDD SANT 16 61 IPR001005 -
Gma09g02165 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 385 - -
Gma09g02165 390 MobiDBLite consensus disorder prediction 342 362 - -
Gma09g02165 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma09g02165 390 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 385 - -
Gma09g02165 390 Gene3D - 68 134 - -
Gma09g02165 390 SMART sant 13 63 IPR001005 -
Gma09g02165 390 SMART sant 66 114 IPR001005 -
Gma09g02165 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma09g02165 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma09g02165 390 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02165 Gma-Chr9 47096266 47099870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02165 1 390 MYB Transcription Factor Family AT3G01140 51.493 1.96e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma09g02165 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02165 K09422 - gmx:100781637 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01008 02 10869593 10873704 Gma09g02165 09 47096266 47099870 ECH
Gma01g00474 01 6357955 6359139 Gma09g02165 09 47096266 47099870 ECH
Gma09g02165 09 47096266 47099870 Gma09g02165 09 47096266 47099870 ECH
Gma13g00453 13 16686445 16688841 Gma09g02165 09 47096266 47099870 PCT
Gma09g02165 09 47096266 47099870 Gma13g00453 13 16686445 16688841 PCT