Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02149 ATGACTCCAGTTAATTTGGCTGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGGAGGAGGAGGAAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGTCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGTGGAGCTGCTGCTGCAGCGTTCTACCCATATCTGCAGTACGGAGAAGGGAGTGGCGGTGGCGGAACTAGCGGCGGCTACAGTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCACCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGCCGCCACAGCTGGCTATGCCCAGCACTATGGAACACCAGCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA 801 0.5019 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSSFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGAAAAAFYPYLQYGEGSGGGGTSGGYSSGQGYGVNYPPQAHLFQYSPIASTAAATAGYAQHYGTPAMSLAPSPALQSVCFAVPQA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02149 266 PANTHER OS01G0876800 PROTEIN 1 261 - -
Gma09g02149 266 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Gma09g02149 266 PANTHER BOULE-RELATED 1 261 IPR037366 GO:0003729
Gma09g02149 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Gma09g02149 266 Gene3D - 7 112 IPR012677 -
Gma09g02149 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gma09g02149 266 CDD RRM_RBM24_RBM38_like 16 91 - -
Gma09g02149 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02149 Gma-Chr9 46947451 46953007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02149 12 92 C2H2 Transcription Factor Family AT2G19380 44.444 2.15e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02149 - - gmx:100781647 480.715