Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02141 ATGGTCGTCAACGAGAGACCTTCCAAGAGGATGAAGAGGAGGGTCACAGCTGATCTTTGTGATTTTCTTACTTTTCCGGAGCCTGGCGTCTCTGCCTCCACCGAACCCTTCCGGAACTGTGTACAGCGCTTCCTCTCTCACCATGCGCGCATCACTTTCCCTCCCTCGCTCTTTCCTTCACTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCCTTGACGCTCCCGATCTCTCGCCGGCGATAGTCACTCTCGACATTGTCGAGGAAGATGTCACTCGTTCTCGTGCTTCTGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGCGATGCCGTAGAAGCATATCAAAGACCTTGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAACACACATCTTCTGCATGGTGTCGTCCATTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGTTCTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGGTTGCTTCATGCAATCACCAACGGGCATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCAGCTATGCTCTTACGCAAGATGCGTACAAGAATGCAGTGAATACCCTGTCAAGCATGCCCTTGTCATCATTTTCATTCCACGGTCGGGGACCAAGAAGCCACCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTTTGACGATTGGACATCTCTTCTCCTTTATGTTGACATTGATTCATGAATGTCGTAAGCCAGTGGCCATGAGGACATCTAAGCAGACCAGTAACATGTTGTGTGCATGGACGGGAAATGATGTTGAAGAGGTGCAACATGCTTTGATAAAGGTTTTGCTTGCATCGGGTGCTTGTACTGAGGCTAAATGGGTGACAAGACGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCACTTCCCAGGGAAATTAACTGCCAATGGAATGATAGtttgttcacgatgcaatcccatttccagtggcatcGAATTCAGATTAGAACCTTGGTGTAATGGATTGAGTACAAAGTCAAGCTATCCAACAGAAGTTCAACTGATCTCTGATTTGACATTTTTATTTAATTCAATTATTCACCCTGACAAAATGGTGTGCTACAGACCAAAGATTATGAGGAAAAGTGTGGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAGGATTACAAGCCATATGAAATGGCCGTTGAACTGCCTTCAGTCATTAGGCTGTGGTGTCACGTGGAGCTTTCTGATCAGCCCAAGGATGATCCATCCCCACCACCAGAGCTAATTATGCTGCCTTTGAATGCTACCGTTGCTGACCTCAGGAGTGAAGCCACTAGTGCATTTCAAGAGGTGTATGCAATGTACAAGAGGTTTCAAGCTGAGGAACTTCTAGGATACGGGTCAATCAGTGATTCGCTCACCATAAGGTTCTTGCTTGGAACAAGTGGATCAATTCAAATTCAAGGTAAATGTCCAGCTAAACATGGGCTAAGTCGATTTCGAATGGAACGAGGAACAGAGGTGTGGAAGGTGGATTGCACTTGCGGGGCTAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACAAGATGTGCTGGAATTGATAATAATACTGATGGAATGCCTTCTAAGTTTGTTTGTATGGGATGTGTCAACTTGTACCGTGAGGAAACTAAAAAATTACCAGCACCTGGTGAGGAAGCTAACGAGACCTGTAAATTCAACACATCTTGCAGAAATGAAGCTGTAGCAAGGGACTGTGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTGTGGGTTGA 2127 0.4485 MVVNERPSKRMKRRVTADLCDFLTFPEPGVSASTEPFRNCVQRFLSHHARITFPPSLFPSLMTWQILFRVGDLLDAPDLSPAIVTLDIVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNGHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSHLECVISLYQSLAETELLTIGHLFSFMLTLIHECRKPVAMRTSKQTSNMLCAWTGNDVEEVQHALIKVLLASGACTEAKWVTRRALKGAVCRGVSSPELLDYCLKHFPGKLTANGMIVCSRCNPISSGIEFRLEPWCNGLSTKSSYPTEVQLISDLTFLFNSIIHPDKMVCYRPKIMRKSVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLWCHVELSDQPKDDPSPPPELIMLPLNATVADLRSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIRFLLGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNNTDGMPSKFVCMGCVNLYREETKKLPAPGEEANETCKFNTSCRNEAVARDCATVSCNIAVNFGVG 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02141 708 CDD PHD_MMD1_like 611 657 - -
Gma09g02141 708 Pfam PHD-finger 612 658 IPR019787 -
Gma09g02141 708 ProSitePatterns Zinc finger PHD-type signature. 612 657 IPR019786 -
Gma09g02141 708 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 681 - -
Gma09g02141 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Gma09g02141 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 662 IPR013083 -
Gma09g02141 708 SUPERFAMILY FYVE/PHD zinc finger 606 661 IPR011011 -
Gma09g02141 708 SMART PHD_3 611 658 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02141 Gma-Chr9 46901092 46904209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02141 80 657 PHD Transcription Factor Family AT5G22260 27.732 1.01e-82 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma09g02141 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02141 - - gmx:100780558 1454.88