Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02121 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCTGTGCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAaaggAACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACACGAGGGGCTCAGCCTGAAGCAGCAGCACCTGAAGCACATCCTCTTCTGGTTGCTAAAGAGGAAACTAACGCGCTAAAACAAGAAATCCAAACATTGCAAAAGGGTATCAGTTATTTGTTTGAAGGAGGAAATAAGACTATGGCAATTGATGAATTACAACTGCTAGAGAAGAATCTCGAAACTTGGATATACCATATTCGTTCAATGAAGATGaacattatgttacaagaaattcaagctttgaaagataagGAGGGAACACTTAAAGCGGCAAATAAATATCTCCATGACAAGATTGTGGAGAATACTGCGATTTCTAACTTTGCTGAATTTGCTACTGATACTTCTTACCCACTAATTGTACAAGATGGGGGTTTTCAACTCTATTAA 612 0.4052 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKFTRGAQPEAAAPEAHPLLVAKEETNALKQEIQTLQKGISYLFEGGNKTMAIDELQLLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAISNFAEFATDTSYPLIVQDGGFQLY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02121 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Gma09g02121 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 Pfam K-box region 93 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02121 203 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Gma09g02121 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gma09g02121 203 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma09g02121 203 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g02121 203 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 201 - -
Gma09g02121 203 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02121 Gma-Chr9 46767181 46771101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02121 1 202 MADS-box Gene Family AT1G71692 61.611 8.70e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma09g02121 K-box 8.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02121 - - gmx:100815314 390.963